Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242625g00002 ATGGGAAGTGGAAGCTCGCCATGTGCTTCATGCAAGCTTCTTAGAAGGAGGTGTGCAAAGGATTGCATCTTCGCACCTTATTTCCCTTCCGATGACCCTCAGAAGTTCGCCATTGTTCATAAGGTCTTCGGTGCTAGCAACGTTAGCAAAATGTTGCAGGAACTTCCGGTTGATCAAAGAGCAGATGCAGTGAGTAGTTTGGTGTACGAAGCGAATGCGAGGGTTCGAGACCCGGTGTACGGATGCGTGGGAGCCATATCATACCTTCAAAACCAAGTTTCAGAGCTTCAAATGCAGCTTGCAGTTGCACAGGCAGAGATACTCTGCATCCAGATGCAGCATGAGCCTGCAGCAATTCCCAATCCACAACATATTATGGACTTTCAAGAACACAATAATAATAATCATCACCATCATTATCTTAACTTTGCAGCTTCTTCTAGCAATGTAATCCATGATTCTCTCTCCAGAGAGACTTTGTTTGGACATGACATGGTTTCTTAA 504 0.4484 MGSGSSPCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPVDQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPAAIPNPQHIMDFQEHNNNNHHHHYLNFAASSSNVIHDSLSRETLFGHDMVS 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242625g00002 167 Coils Coil 86 106 - -
Stsc242625g00002 167 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Stsc242625g00002 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 135 - -
Stsc242625g00002 167 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242625g00002 Stsc-Chr242625 20068 21206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242625g00002 2 117 AS2 family AT2G30130 92.241 5.29e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc242625g00002 LOB 8.7e-43 No_clan