Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242615g00003 ATGGCGCAAATTCTGCTACACGGGACTCTCCATGCCACCATCTATGAGGTGGATAAGCTCAAGACGAGCGGTGGCAATGTTTTCACCAAGCTGGTGCAAAACTTCGAGGAGACAGTTGGTTTTGGAAAAGGAGTTACCAAACTGTATGCAACCATTGATCTGGAGAAAGCACGAGTTGGAAGGACCAGGATTTTAGAAAAAGACCATAGTAATCCCAAATGGTACGAGTCTTTTCACATTTACTGTGCCCACATGGCATCAAACATCATATTCACTGTCAAAGATGACAATCCCATTGGAGCAACCTTAATCGGAAGAGCATACGTACCTGTTGAGGATGTCTTGGATGGTGAGGAAGTAGATAGATGGGTTGAGATATTGGATGAGCACAAGAATCCAATTCATGGCAACTCAAAGATTCATGTCAAGCTGCAATTCTTTGATGTCACCAAAGACAAGAACTGGGCACATGGTGTTAGGAGTGCTAAATATCCCGGTGTTCCCTACACTTTCTTCTCACAAAGAAAAGGCTGCAAGGTTTCTCTTTACCAGGATGCTCATGTCCCTGATAATTTTGTCCCCAAAATACCCCTTGCTGGAGGCCAGACTTACCAGCCTCATAGGTGTTGGGAGGATGTGTTCGATGCAATCGAAAAAGCCAGGCATTTGATATACATAACGGGTTGGTCTGTTTACACTGAGATAACATTGGTCAGGGATTCAAGGAGGCCAAAGCCTGGTGGAGACTTAACACTTGGTGAGCTTCTCAAGAAGAAGGCGAATGAGGGTGTCAGGGTCTTGATGCTTGTTTGGGATGACAGAACATCTGTTCCATTGTTGAAAAAAGATGGGTTGATGGCTACTCATGATGAAGAAACTGAGAGGTACTTCCAAGGAACTGAAGTGCATTGTGTTTTGTGCCCTCGGAATCCTGATGATGGTGGAAGCATTATTCAGGATTTGCAAATCTCTACAATGTTTACTCATCACCAGAAGATTGTGGTGGTGGATAGTGNNNNNNNNNNAATAGTGAGCTTTGTTGGGGGTATTGATCTCTGTGATGGAAGATATGACACTCAATTCCACTCGCTTTTCAGAACCTTGGACACAGCGCACCACGATGACTTTCATCAGCCAAACTTTGCCGGTGCTTCCATCATGAAAGGTGGTCCTAGGGAGCCTTGGCATGACATCCACTCTCGGCTCGAAGGGCCTATTGCGTGGGATGTCCTGTTCAACTTCGAGCAGAGATGGAGGAAGCAAGGTGGAAAGGACTTACTCATTCCTTTGAGAGAGCTGGAAGATGTCATCATTCCTCCCTCCCCAGTAACATTCCCTGATGATCACGAGACATGGAACGTTCAATTATTCAGATCAATTGATGGTGGAGCTGCTTTTGGGTTCCCAGAGACTCCTGAAGATGCTGCGAGAGCTGGCCTTGTTAGTGGAAAGGATAACATCATAGACCGTAGCATTCAAGATGCTTATATCAATGCAATTAGGCGTGCAAAGAATTTCATCTATATTGAAAATCAGTATTTCCTAGGAAGCTGCTTTGGGTGGAGCCCTGATGGCATTAAGCCTGAGGACATTGGCGCATTGCATCTAATCCCAAAGGAGCTTTCACTTAAGATTGTAAGCAAGATCGAAGCCGGGGAGAGGTTCACCGTCTACATTGTGGTTCCAATGTGGCCAGAGGGATTCCCAGAGAGTGGTTCAGTTCAGGCCATATTGGATTGGCAGAGGAGGACAATGGAGATGATGTACAAGGATATAGTTGATGCACTCAGTGCCAAGGGAATTGTGGAAGATCCCAGAAACTATTTGACATTCTTCTGCCTCGGCAACCGTGAGGTCAAGAAGCCAGGGGAGTATGAGCCTTCAGAGAGACCAGACCCTGATTCTGATTACATCAAAGCACAGGAGAACCGCCGATTCATGATTTATGTCCATGCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGATCAGCCAACATCAACCAGAGATCAATGGATGGTGCAAGAGACTCGGAAATAGCCATGGGAGCTTATCAGCCATACCATTTGGCTGCAAGGGAGCCAGCAAGGGGACAGATCCATGGTTTCCGCATGTCGCTGTGGTATGAGCACCTTGGCATGATCAGAGAATCCTTCCTCCACCCTGAGAGTGAAGAATGTATCAAGGTGGTGAACCAGGTTGCTGACAAGTATTGGGATCTGTATTCCAGCGAGTCCCTTGAGCATGACCTCCCCGGCCACCTTCTTCGCTACCCGGTTGGCATTGCCGGAGATGGAACTGTGGCTGAGCTTCCAGGATTTGAGTTCTTCCCTGACACGAAGGGTCGTGTTCTTGGAACCAAAACTGACTACTTGCCCCCTATCCTTACTACTTAA 2403 0.4628 MAQILLHGTLHATIYEVDKLKTSGGNVFTKLVQNFEETVGFGKGVTKLYATIDLEKARVGRTRILEKDHSNPKWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEDVLDGEEVDRWVEILDEHKNPIHGNSKIHVKLQFFDVTKDKNWAHGVRSAKYPGVPYTFFSQRKGCKVSLYQDAHVPDNFVPKIPLAGGQTYQPHRCWEDVFDAIEKARHLIYITGWSVYTEITLVRDSRRPKPGGDLTLGELLKKKANEGVRVLMLVWDDRTSVPLLKKDGLMATHDEETERYFQGTEVHCVLCPRNPDDGGSIIQDLQISTMFTHHQKIVVVDSXXXXIVSFVGGIDLCDGRYDTQFHSLFRTLDTAHHDDFHQPNFAGASIMKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLIPLRELEDVIIPPSPVTFPDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPDGIKPEDIGALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMEMMYKDIVDALSAKGIVEDPRNYLTFFCLGNREVKKPGEYEPSERPDPDSDYIKAQENRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLAAREPARGQIHGFRMSLWYEHLGMIRESFLHPESEECIKVVNQVADKYWDLYSSESLEHDLPGHLLRYPVGIAGDGTVAELPGFEFFPDTKGRVLGTKTDYLPPILTT 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242615g00003 800 Pfam Phospholipase D C terminal 719 790 IPR024632 -
Stsc242615g00003 800 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 356 IPR001736 GO:0003824
Stsc242615g00003 800 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Stsc242615g00003 800 Pfam C2 domain 8 126 IPR000008 -
Stsc242615g00003 800 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 646 673 IPR001736 GO:0003824
Stsc242615g00003 800 CDD PLDc_pPLDalpha_2 484 693 - -
Stsc242615g00003 800 SUPERFAMILY Phospholipase D/nuclease 150 437 - -
Stsc242615g00003 800 PANTHER PHOSPHOLIPASE D 4 789 IPR015679 -
Stsc242615g00003 800 PIRSF PLD_plant 1 800 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc242615g00003 800 FunFam Phospholipase D 459 692 - -
Stsc242615g00003 800 CDD C2_plant_PLD 2 147 - -
Stsc242615g00003 800 SUPERFAMILY Phospholipase D/nuclease 439 729 - -
Stsc242615g00003 800 Gene3D Endonuclease Chain A 199 432 - -
Stsc242615g00003 800 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Stsc242615g00003 800 Gene3D Endonuclease Chain A 469 691 - -
Stsc242615g00003 800 Gene3D C2 domain 6 160 IPR035892 -
Stsc242615g00003 800 FunFam Phospholipase D delta 200 436 - -
Stsc242615g00003 800 Pfam Phospholipase D Active site motif 647 673 IPR001736 GO:0003824
Stsc242615g00003 800 Pfam Phospholipase D Active site motif 325 356 IPR001736 GO:0003824
Stsc242615g00003 800 SMART C2_3c 9 123 IPR000008 -
Stsc242615g00003 800 SMART pld_4 646 673 IPR001736 GO:0003824
Stsc242615g00003 800 SMART pld_4 325 356 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242615g00003 Stsc-Chr242615 4057 7890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242615g00003 1 800 Phospholipase D Gene Family (Wang group) AT3G15730 79.012 0.0 1372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242615g00003 K01115 - gmx:100784434 1484.54