Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242614g00002 ATGGCGGCGATGATGCAAGGAGTGCAGAAGAACACTTTATATGTAGGTGGTTTAGCAGAGGAAGTTAACGAGGCCATACTTCACGCGGCCTTCATACCCTTTGGGGACATTAAGGATGTTAAGACCCCACTTGACCAGGCAACACAGAAGCACAGGTCATTTGGCTTCGTTACGTTCCTCGAGAGGGAGGATGCTGCTGCTGCCATGGATAACATGGATGGTGCTGAGCTCTACGGTCGTGTACTCACTGTTAACTACGCACTTCCTGAGCGCATCAAGGGTGGTGAGCAGGGCTGGGCTGCTCAACCAATTTGGGCTGATGCTGACACTTGGTTTGAGAGGCAACAACAAGAAGAAGAGATGCGTCATCTGGAGGCAGAAAATCGAGCTGCAAATCAGGCTGCAGAAGACTTGCGCAGGAAAAAAGCTGCTGAAGAGCGTGAGGGAGAAAAGGAAGATGAAATTGATCCTATGGGAAAGGCCGAATCAGAGAATCTGCAACAGAATAACTAG 513 0.4971 MAAMMQGVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAAAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRHLEAENRAANQAAEDLRRKKAAEEREGEKEDEIDPMGKAESENLQQNN 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242614g00002 170 Coils Coil 114 148 - -
Stsc242614g00002 170 PANTHER ATPASE E1 3 170 - -
Stsc242614g00002 170 MobiDBLite consensus disorder prediction 117 160 - -
Stsc242614g00002 170 CDD RRM_PPIE 13 87 IPR034168 GO:0003723
Stsc242614g00002 170 SMART rrm1_1 12 85 IPR000504 GO:0003723
Stsc242614g00002 170 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Stsc242614g00002 170 Gene3D - 3 153 IPR012677 -
Stsc242614g00002 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 82 IPR000504 GO:0003723
Stsc242614g00002 170 FunFam Peptidyl-prolyl cis-trans isomerase 3 156 - -
Stsc242614g00002 170 MobiDBLite consensus disorder prediction 117 170 - -
Stsc242614g00002 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242614g00002 Stsc-Chr242614 2250 4000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242614g00002 11 89 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 3.18e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242614g00002 - - ccaj:109797476 279.256