Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242608g00001 GAAGCTCGTGTCTCTGATTTCGGCACTGCTAGGTTCTTGAAGCCAGATTCATCGATTTGGACGTCGTTTGCAGGCACATATGGCTATGCTGCTCCAGAACTCGCTTACTCGATGGTAGTGACTGAGAAATCGGATGTGTTCAGCTTTGGTGTTTTGGCCTTAGAAATAATTTCAGGAAAGCACCCTGCTGATCTTGTTCTTCACATACAAGCTTCTAGTGATTCAAATATGATAAAGTTGAATGAGATTTTAGACCCACGCCTCTCACATCCAACAAATGAGCATATTCTAAAAGCGTTGGCCTTGATTGTAAATATAAGTGTTTCATGTTTGCAGACAAGCCCTCAAATTCGACCAACCATGCGAAATATAGTTCGCCTGCTTGAGGTGGAAGCTGCAGACAAATATTGA 411 0.4258 EARVSDFGTARFLKPDSSIWTSFAGTYGYAAPELAYSMVVTEKSDVFSFGVLALEIISGKHPADLVLHIQASSDSNMIKLNEILDPRLSHPTNEHILKALALIVNISVSCLQTSPQIRPTMRNIVRLLEVEAADKY 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242608g00001 136 Gene3D Transferase(Phosphotransferase) domain 1 1 135 - -
Stsc242608g00001 136 ProSiteProfiles Protein kinase domain profile. 1 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242608g00001 136 Pfam Protein kinase domain 3 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242608g00001 136 SUPERFAMILY Protein kinase-like (PK-like) 2 128 IPR011009 -
Stsc242608g00001 136 PANTHER LEUCINE RICH REPEAT KINASE 2 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242608g00001 Stsc-Chr242608 1 727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242608g00001 1 128 Receptor kinase-like Gene Family AT5G65700 39.855 3.72e-25 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc242608g00001 Pkinase 2.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242608g00001 - - ahf:112786571 222.246