Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242606g00004 ATGGGTTCTTCTAATAATGGTGGTGTGCCACCGGGGTTTCGATTTCATCCCACCGATGAGGAATTGCTTCATTACTACTTGAAGAAGAAGGTTTCGTTTCAGAAGTTTGACATGGATGTTATTAGAGAGGTCGACCTCAACAAGATGGAGCCTTGGGACTTGCAAGAAAGATGCAGAATAGGTTCAACACCGCAAAACGAGTGGTATTTCTTCAGCCACAAGGACAGAAAGTACCCAACAGGGTCAAGGACCAACCGAGCAACCAACGCAGGGTTCTGGAAAGCCACGGGTAGAGACAAGTGCATAAGGAACAGTTACAAGAAGATTGGGATGAGAAAGACACTTGTTTTCTACAAAGGTAGAGCCCCTCATGGCCAAAAGACTGATTGGATCATGCACGAGTACCGCCTTGAAGATTCTAATGATCCTCAAGCAAACTCCAATGAAGATGGATGGGTGGTGTGCAGGGTGTTCAAGAAGAAGAACCTATTCAAGATTGGAAACGATGGAGGTGGCGGCTCCACGCACACCTCATCGGATCATCAACTCAACAATTCAACGGCCACCAATGCTCGTTCATTCATGCAAAGGGAGAACCACTACCTACTTCATCATCAGCAAAACCCTAGGAATGGAAACCCATCATCTTCATCCTCAGGCTTTGATGAGCTCGATAAACCCGAACTCGGTCTCCATCACTATCCTCACATGCAAAACCCACACTATTCACTCTTCCATCACTCTCAGCAACTTCTTCAACACCCGCAGGCCCACAAGCCCATCGTCTATGATTACTCTTATGCACCTGCAATTCCCTCAGACCCTCCTGTCATCGCTAAGCAGCTCATGACAAACCCTAGAGACTGCGATAGCGGTGGCAGTGAGGGCCTGAGGTACCAGCAGGTTTCGGAGCCTGGTATAGAGGTTGGATCATGTGAACAAGCCCAGGAAATGGGCGCCGCAAGAGGAGGAGGAGAAGGAATGAACGAATGGGGCGTGCTTGATAGGCTTGTGACCTCCCACCTTGGAAATGAAGATTCAGGCAACAAAGGGATTAGGTTTGAAGATGCAAATCCACACCAGATTAACCAGCTTTCTTTGAGGGGAGAGATGGATTTCTGGGGCTATGGAAAACAATAA 1140 0.4789 MGSSNNGGVPPGFRFHPTDEELLHYYLKKKVSFQKFDMDVIREVDLNKMEPWDLQERCRIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLEDSNDPQANSNEDGWVVCRVFKKKNLFKIGNDGGGGSTHTSSDHQLNNSTATNARSFMQRENHYLLHHQQNPRNGNPSSSSSGFDELDKPELGLHHYPHMQNPHYSLFHHSQQLLQHPQAHKPIVYDYSYAPAIPSDPPVIAKQLMTNPRDCDSGGSEGLRYQQVSEPGIEVGSCEQAQEMGAARGGGEGMNEWGVLDRLVTSHLGNEDSGNKGIRFEDANPHQINQLSLRGEMDFWGYGKQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242606g00004 379 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 218 - -
Stsc242606g00004 379 SUPERFAMILY NAC domain 8 160 IPR036093 GO:0003677|GO:0006355
Stsc242606g00004 379 MobiDBLite consensus disorder prediction 205 227 - -
Stsc242606g00004 379 MobiDBLite consensus disorder prediction 205 222 - -
Stsc242606g00004 379 ProSiteProfiles NAC domain profile. 9 160 IPR003441 GO:0003677|GO:0006355
Stsc242606g00004 379 FunFam NAC domain-containing protein 18 164 - -
Stsc242606g00004 379 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Stsc242606g00004 379 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242606g00004 Stsc-Chr242606 15759 18071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242606g00004 3 375 NAC Transcription Factor Family AT1G33280 53.247 4.03e-123 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc242606g00004 NAM 3.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242606g00004 - - adu:107477630 733.406