Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242604g00003 ATGGGACTCAAGAGTGATCTTACTGGAGTAGGTATTTCATCCACTCAGGGATCCATCCGTGGCTATTTTCCTCCGGATGTGGTGTTTATTGTACATGGAAGACCTATTGAAGCTCACAGAGTCATATTAAGCGCAAGGTCACCATTTTTCAAGAAAAAGTTTGCAACTGATTGGAAAGATCGCAGGGAAGTGAGATTGCCACGGGAAAAATTGTCATATCCTGCACTCTACAGCCTTATACACTTCTTCTATTCAGACAGATTAGAGGTTGCCGTGGATGACATGGAAGATCTTGTGAGAATCTGCAGAGTATGCAACTGCGACTCACTTCAGAAAATTATCGAGAAAGAAGTCGTTCATCAAAAGTATGCGGAGTATAAAGCATTGAAGGATGTAGATAATTCTCAGAAACGATACATTTTGCAAGGTCTATCCCTTCCTGTAGAGGACAGGCTTCCTGCAGCCTTAAGTCGAATCCTTCAAACTGCCCTTTCAAATTCAACCCTTGGAAACAGTCAAGATTATGCAGTTGATAAATTGATTCCTCAGATAGGTGCTATGGAAGTGGGCAGATCTGTTGATGATCTTGCTGATGTATGTGTAAGAGTTGATGGGAAAAATTTTCGTTGCCATCAAGTTGTTCTAGCATCAAGGTACACTGATGGCTTGCAGGATATAAACCCAGATCAGGCTGAGGAAATGTTTGATGTTGCTTCTAGATACCTATTGTTTCCTCTTAAGCGTGCGGTGGCTGATGTGTTGTTGCCACACTTGGAGATGGTGTCACCCGAAGAACTGTGCCACTGGTTAATATTAGCAGACCTGTATGGTGTTTTCAAGATTCGGGAGTATTGTCTCGACACCATTGCTTGTAACTTTGAAACATTTGCTGATACCAAAGAGTTCCGGGCAATGCTGCTGACTCTGCCTCCACCATCCGGAGACTCTTCTCTTCGCACCACTCTCCCAAGCATGCCTGGATCTGATCTAAAATCCGATCAAGGAAACCTTCTAGATGATTTGCGCGAGAAATGGCTTGAAATTGAAGCTGCCGAGCTCGACCAGAGAGATGAGAGTGCATTGCAATTTGATAAGCGGCTCGAGATGCTTATGCTCGTTGCCGAGCAAGAAAAATCTGATAATTCAGATGCAGATGCTGATGCTGATGGTGTGGATGACCTCAAAACCTTGCCTTTCTCTCCAGACAGCACATTAATTTTAGGTGATGCTGAAAGAACTGTGATAAGTAAACTGGAATCAAATGTATAA 1269 0.4318 MGLKSDLTGVGISSTQGSIRGYFPPDVVFIVHGRPIEAHRVILSARSPFFKKKFATDWKDRREVRLPREKLSYPALYSLIHFFYSDRLEVAVDDMEDLVRICRVCNCDSLQKIIEKEVVHQKYAEYKALKDVDNSQKRYILQGLSLPVEDRLPAALSRILQTALSNSTLGNSQDYAVDKLIPQIGAMEVGRSVDDLADVCVRVDGKNFRCHQVVLASRYTDGLQDINPDQAEEMFDVASRYLLFPLKRAVADVLLPHLEMVSPEELCHWLILADLYGVFKIREYCLDTIACNFETFADTKEFRAMLLTLPPPSGDSSLRTTLPSMPGSDLKSDQGNLLDDLREKWLEIEAAELDQRDESALQFDKRLEMLMLVAEQEKSDNSDADADADGVDDLKTLPFSPDSTLILGDAERTVISKLESNV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242604g00003 422 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 21 218 IPR044515 -
Stsc242604g00003 422 FunFam BTB/POZ domain-containing protein 19 141 - -
Stsc242604g00003 422 CDD BTB_POZ_ZBTB_KLHL-like 196 241 - -
Stsc242604g00003 422 SUPERFAMILY POZ domain 191 257 IPR011333 -
Stsc242604g00003 422 SUPERFAMILY POZ domain 24 117 IPR011333 -
Stsc242604g00003 422 CDD BACK 262 305 - -
Stsc242604g00003 422 Gene3D Potassium Channel Kv1.1; Chain A 219 300 IPR011333 -
Stsc242604g00003 422 SMART BTB_4 25 122 IPR000210 GO:0005515
Stsc242604g00003 422 MobiDBLite consensus disorder prediction 314 331 - -
Stsc242604g00003 422 Gene3D Potassium Channel Kv1.1; Chain A 20 140 IPR011333 -
Stsc242604g00003 422 MobiDBLite consensus disorder prediction 314 333 - -
Stsc242604g00003 422 Pfam BTB/POZ domain 25 121 IPR000210 GO:0005515
Stsc242604g00003 422 ProSiteProfiles BTB domain profile. 25 92 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242604g00003 Stsc-Chr242604 15209 19081 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc242604g00003 BTB 1.1e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242604g00003 K10520 - gmx:100812009 603.594