Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242600g00001 ATGGAGTTCTTTCATAACGAACTCCATTCTTTCTCTAACGACAATGACAAATTGATGGAGTTTTCACCCATGGATGATTTCTACGATTGGGCGCCATTGTTAAGCAATCAACAGCTTTTCTTCATCAACGACTTGCCAGAAGTTGATAACGAATTTGAGGACCTTCCACCACTCGATGAACTCAACAAGGTTGAGAAGGATTTCAAGAAAGAAATTCAAGAAGAGGAAGAGGAGGAGGATAATCAAGAACAGAAACGGTTACTCTTATTATCAGAACTTGTTCCAAGTAGCAGCAGCAGTATTGGAACAAAAAAGAAGAAGAATGAGTTGGATTTTGATGAGATTAAGAAGCACTTCGATTTGCCAATCACAGAAGCTGCTAACAAGATGAACATTGGTGTCACATTGTTGAAGAGAAGGTGTAGGGAACTCAACATAAATCGTTGGCCTCACAGAAAAATCAGAAGCTTGCATTTACTCATACAAAATCTCAAGGAGATGGGTTTGGATAATGAGGTTGAAATGTTGGAGCAAGAAACAAAGATGATGGAGAAAATTCCGGGCATGGAACTAACGAAAGAGACCAAGAGACTAAGGCAGGCATGTTTTAAAGCCAATTTCAAAAAGAGGAGATTTTTAGCCTCCAAATCTTACTAG 657 0.3896 MEFFHNELHSFSNDNDKLMEFSPMDDFYDWAPLLSNQQLFFINDLPEVDNEFEDLPPLDELNKVEKDFKKEIQEEEEEEDNQEQKRLLLLSELVPSSSSSIGTKKKKNELDFDEIKKHFDLPITEAANKMNIGVTLLKRRCRELNINRWPHRKIRSLHLLIQNLKEMGLDNEVEMLEQETKMMEKIPGMELTKETKRLRQACFKANFKKRRFLASKSY 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242600g00001 218 Pfam RWP-RK domain 110 157 IPR003035 -
Stsc242600g00001 218 Coils Coil 58 92 - -
Stsc242600g00001 218 ProSiteProfiles RWP-RK domain profile. 97 179 IPR003035 -
Stsc242600g00001 218 PANTHER PROTEIN RKD4 106 217 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242600g00001 Stsc-Chr242600 4336 5319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242600g00001 107 218 AtRKD Transcription Factor Family AT5G53040 51.786 8.18e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc242600g00001 RWP-RK 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242600g00001 - - aip:107605887 272.707