Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242596g00002 ATGGCTTGGATTTGGATGAGGATCACCTTCAACCTTGACACAGTATCTCTGCTGTTGCTCCTGAATTTTGCAACTATTTCAAAAGCACAAGGTCCCACTTACCTTTACAATTTCTGCGATGCCAACAAGACCACTCCCAACAGCCCCTTCTTCAAAAAGGATCTCAACACCCTCTTATCATCCCTCTCTTCCAACGCCACCGCCAACACGGACTTCTTCAACACCACCGTCCCCGGCAGAAACCCCAACGACACGGCCTACGGTCTCTTCATGTGCAGAGGCGACTTCTCCTCTTGCGGGCACTGCGTGGTCAACGCCACACAGAAGCTTTCCTCAGACTCAGACTGTACCTTGTCAAAACGAGCCATCATTTGGTATGACGAGTGCATGGTTTGGTATTCCAATAACCGCTCTATCCTCTCCACATTTGCCACCAGGCCTGGCGTTTACCTCTCCAACACGGGTAACGTCTCCAATCAGGAAAGCTTCATGAAGTTGTTGTTCAGAACCATGAACGAAACGGCGCAAGAAGCAGCCAAGTCCCCTGTTCTTGAAAAGAAGTACTTCACAAGGCAAGCCAACATATCTGGTTTTCAGAACCTTTATTGTATGGCTCAGTGCACTGATAACCTCACACCACAAGACTGTACCAGCTGTCTCACTGAAGCCATAACTGAATTAACTCCTTGCTGTAGTGAAAAGCAAGGAGGGAGGGTTCTATTCCCCAGCTGTTTCGTTAGGTATGAGTTGTACCCTTTCTATGAATCCTCCTCCTTAGCACCTTCAAGTCCAGCAGATTCAAAAGATACGCAAGATCCTGTTTATATTTCCAGAAATTGCTCAACTGATGCCGTCGACAATAGCTCTTTATTATACCAATCACGTCTCAGAACCCTCTTGGCTAACTTGTCTTCCATCACTGCTAGCGGCGTGTTATTTAGTAAGGGGAAGGTGGAGGGCACTGTGTACGGCCTCTTCATGTGCCGGGATGACCTGCCTCCTATCCTCTGCTCACAATGCGTTGGGAATGCGAGCGATAAAATATCTTCAGATTGCGGCTCCTCCTATAAGGAGGCTATTATTTGGTACAGTCACTGCTTGCTTCGCTACTCAAGTAGTGAATCAATCTTGTCGATCGTAGAGACTAATCCCAGATATGTGAACTTGAATATCATCAATACTACCGACCCTTCCCAGAAGCAAAGCGTATACTTCACTTCATCCAATATATTATATGATGTGGCCAAACAAGCAGCATACGTTGACAATCACAACAAATATGCAACAAACAAATCCAGATTGAACCCTTCACAATGGCTCTACACTCTTGCTCAGTGTACGCCTAATCTCTCTCCAGAAAATTGCAACGGCTGTCTAAATACTGTCATTGCATCCATAATTGAGAACCTTAATTCAGCGAGCGTAACAGGAAGGATTCTAACTCCAAGCTGCAATATCAGGTTTGAATTCTTCCGGTTTTACAGGGATGCTCTTGCTAACCAACCTCCCTCGCTCCTCACTCACCCCTCCAGTTCTAAAGAGAATGAAAAAGGCCACTCCCAAACAATAATCTTAATTGTTGTGCCCTCATTTGTTTCGGTGATACTCCTCTGTTTCGGCTGTTATTTGCTCCGGATAAAAATAAGAAAGAGTAGCAAGCATGTTCTTAAAGCAAACTTTGGGGATGAAAGTGCAACTTTAGAGCCACTGCAATTTGGGTTGGCGGTTATTAAGGCAGCGACAAACAACTTTTCACTTGAGAATAGGATTGGCAAAGGCGGATTTGGAGAAGTTTTTCAGGCAAATAGCAGTAAAGAGGCTTTCGGCAAGTTCCAAACAAGTGGATATATGTCTCCTGAATATGCAATGCTTGGACAATTTTCAGAAAAATCAGATGCTTATAGTTATGGAATAATTATTTTAGAGATTCTTAGTAGAAAAAAGAACACAAGTTGTTATAAATCACACTATACATACGATTATATTTGGAGACAATGGAGCGATAACAAACCGTTAAGCATATTAGACCCAAATATTAAAGATAACTTCTCTGAAATTGAAGTCAATAAGTGCATTCAAATTGGTCTATTATGTCTTCAACAAGATCCAGATGCTAGACCAACAATGGCAGCCATTGTTTCATATCTTAGCAGCAGTGATCCAATTGAATTGCCCAGCCCAGAACAACCTGCATTTTTCTTGGACAGAAGGATGGATCAAAGGGCAGCTGCACAGGAATCAGGTTCAAGTAAATCTATCAGCAATCCCGCAACACTTTCTAGGAATGAAATGTCTATTACTAGCTTTGTTCCTAGATGA 2319 0.4334 MAWIWMRITFNLDTVSLLLLLNFATISKAQGPTYLYNFCDANKTTPNSPFFKKDLNTLLSSLSSNATANTDFFNTTVPGRNPNDTAYGLFMCRGDFSSCGHCVVNATQKLSSDSDCTLSKRAIIWYDECMVWYSNNRSILSTFATRPGVYLSNTGNVSNQESFMKLLFRTMNETAQEAAKSPVLEKKYFTRQANISGFQNLYCMAQCTDNLTPQDCTSCLTEAITELTPCCSEKQGGRVLFPSCFVRYELYPFYESSSLAPSSPADSKDTQDPVYISRNCSTDAVDNSSLLYQSRLRTLLANLSSITASGVLFSKGKVEGTVYGLFMCRDDLPPILCSQCVGNASDKISSDCGSSYKEAIIWYSHCLLRYSSSESILSIVETNPRYVNLNIINTTDPSQKQSVYFTSSNILYDVAKQAAYVDNHNKYATNKSRLNPSQWLYTLAQCTPNLSPENCNGCLNTVIASIIENLNSASVTGRILTPSCNIRFEFFRFYRDALANQPPSLLTHPSSSKENEKGHSQTIILIVVPSFVSVILLCFGCYLLRIKIRKSSKHVLKANFGDESATLEPLQFGLAVIKAATNNFSLENRIGKGGFGEVFQANSSKEAFGKFQTSGYMSPEYAMLGQFSEKSDAYSYGIIILEILSRKKNTSCYKSHYTYDYIWRQWSDNKPLSILDPNIKDNFSEIEVNKCIQIGLLCLQQDPDARPTMAAIVSYLSSSDPIELPSPEQPAFFLDRRMDQRAAAQESGSSKSISNPATLSRNEMSITSFVPR 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242596g00002 772 FunFam Cysteine-rich receptor-like protein kinase 25 147 253 - -
Stsc242596g00002 772 ProSiteProfiles Gnk2-homologous domain profile. 32 138 IPR002902 -
Stsc242596g00002 772 Gene3D Transferase(Phosphotransferase) domain 1 550 724 - -
Stsc242596g00002 772 ProSiteProfiles Gnk2-homologous domain profile. 382 493 IPR002902 -
Stsc242596g00002 772 SUPERFAMILY Protein kinase-like (PK-like) 611 737 IPR011009 -
Stsc242596g00002 772 Gene3D - 385 493 IPR038408 -
Stsc242596g00002 772 Gene3D - 31 137 IPR038408 -
Stsc242596g00002 772 Gene3D - 148 253 IPR038408 -
Stsc242596g00002 772 Gene3D - 272 374 IPR038408 -
Stsc242596g00002 772 MobiDBLite consensus disorder prediction 743 772 - -
Stsc242596g00002 772 Gene3D Phosphorylase Kinase; domain 1 575 615 - -
Stsc242596g00002 772 ProSiteProfiles Gnk2-homologous domain profile. 145 253 IPR002902 -
Stsc242596g00002 772 MobiDBLite consensus disorder prediction 737 772 - -
Stsc242596g00002 772 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 18 261 - -
Stsc242596g00002 772 Pfam Protein tyrosine and serine/threonine kinase 614 716 IPR001245 GO:0004672|GO:0006468
Stsc242596g00002 772 Pfam Salt stress response/antifungal 401 489 IPR002902 -
Stsc242596g00002 772 Pfam Salt stress response/antifungal 39 135 IPR002902 -
Stsc242596g00002 772 Pfam Salt stress response/antifungal 155 251 IPR002902 -
Stsc242596g00002 772 Pfam Salt stress response/antifungal 287 372 IPR002902 -
Stsc242596g00002 772 ProSiteProfiles Gnk2-homologous domain profile. 273 375 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242596g00002 Stsc-Chr242596 3613 7144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242596g00002 589 772 Receptor kinase-like Gene Family AT4G05200 38.384 3.59e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc242596g00002 PK_Tyr_Ser-Thr 3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242596g00002 - - aip:107616499 628.632