Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242596g00001 ATGGCTTGGATTTGGATGAGGATCACCTTCAACCTTGACACAGTATCTCTGCTGTTGCTCCTGAATTTTGCAACTATTTCAAAAGCACAAGGTCCCACTTACCTTTACAATTTCTGCGATGCCAACAAGACCACTCCCAACAGCCCCTTCTTCAAAAAGGATCTCAACACCCTCTTATCATCCCTCTCTTCCAACGCCACCGCCAACACGGACTTCTTCAACACCACCGTCCCCGGCAGAAACCCCAACGACACGGCCTACGGTCTCTTCATGTGCAGAGGCGACTTCTCCTCTTGCGGGCACTGCGTGGTCAACGCCACACAGAAGCTTTCCTCAGACTCAGACTGTACCTTGTCAAAACGAGCCATCATTTGGTATGACGAGTGCATGGTTTGGTATTCCAATAACCGCTCTATCCTCTCCACATTTGCCACCAGGCCTGGCGTTTACCTCTCCAACACGGGTAACGTCTCCAATCAGGAAAGCTTCATGAAGTTGTTGTTCAGAACCATGAACGAAACGGCGCAAGAAGCAGCCAAGTCCCCTGTTCTTGAAAAGAAGTACTTCACAAGGCAAGCCAACATATCTGGTTTTCAGAACCTTTATTGTATGGCTCAGTGCACTGATAACCTCACACCACAAGACTGTACCAGCTGTCTCACTGAAGCCATAACTGAATTAACTCCTTGCTGTAGTGAAAAGCAAGGAGGGAGGGTTCTATTCCCCAGCTGTTTCGTTAGGTATGAGTTGTACCTTTTCTATAGCTCTGATTCTTTGGCTCCTTCGCCTTCGCCTTCTTCGCCAGCAGGCATTCCTCCTCCACCTGCAACTAATTCATCTAATTCTAGAGGAAGTAGTGGACTATCAACCGGGACTATTGTTGCAATTGTGGTTCCAATTGCCGTTGCTGTGATACTGTTTATTGTGGGTGTTTGTTTCATAAGTAGAAGAAGGGCAAGGAAGAAGCATGACTCTGCACAAGATCCCCAAACTGTTTCCGGCATCTCTAGCGTTGATTCGTTGAGATTTGATTTGAGTACAATTGAAGCAGCCACAAAGAAATTCTCTCAAGATAATAAGCTTGGTGAAGGTGGATTTGGTGAGGTTTACAAGGGCTTGCTTCCAAGTGGACAAGAAGTAGCTGTTAAGAGGCTCTCTAGAGGATCTGTACAAGGTGGAGAAGAATTCAAGAATGAAGTAGAGCTGGTTGCCAGGCTTCAACATAGATATCTAGTCAGGCTTTTGGGATTTTGCTTGCAAGGAGAAGAAAAGATACTTGTCTATGAATATGTACCCAACAAAAGCTTGGACTATATTCTTTTTGATCCAGAGAAAAAAGGGTTGTTGAATTGGACAAGACGATACAAGATCATTGGAGGCACTGCTCGAGGAATTCAATATCTCCATGAAGATTCTAGGCTTAAAATCATACATCGTGATCTTAAACCTAGCAACATATTGTTGGACGAAGATATGAATCCAAAAATTNNNNNNNNNNCGGTATGGCAAGGTTATTTGCTGTTGATCAAACTCAAGGAAATACTAGCAGGATTGTTGGCACATATGGATACATGGCCCCAGAGTATGCGATGCATGGAGAGTTCTCTGTTAAGTCTGATGTATACAGTTTTGGAGTCCTTGTTTTGGAGATTTTAA 1656 0.442 MAWIWMRITFNLDTVSLLLLLNFATISKAQGPTYLYNFCDANKTTPNSPFFKKDLNTLLSSLSSNATANTDFFNTTVPGRNPNDTAYGLFMCRGDFSSCGHCVVNATQKLSSDSDCTLSKRAIIWYDECMVWYSNNRSILSTFATRPGVYLSNTGNVSNQESFMKLLFRTMNETAQEAAKSPVLEKKYFTRQANISGFQNLYCMAQCTDNLTPQDCTSCLTEAITELTPCCSEKQGGRVLFPSCFVRYELYLFYSSDSLAPSPSPSSPAGIPPPPATNSSNSRGSSGLSTGTIVAIVVPIAVAVILFIVGVCFISRRRARKKHDSAQDPQTVSGISSVDSLRFDLSTIEAATKKFSQDNKLGEGGFGEVYKGLLPSGQEVAVKRLSRGSVQGGEEFKNEVELVARLQHRYLVRLLGFCLQGEEKILVYEYVPNKSLDYILFDPEKKGLLNWTRRYKIIGGTARGIQYLHEDSRLKIIHRDLKPSNILLDEDMNPKIXXXXVWQGYLLLIKLKEILAGLLAHMDTWPQSMRCMESSLLSLMYTVLESLFWRF 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242596g00001 551 SUPERFAMILY Protein kinase-like (PK-like) 335 496 IPR011009 -
Stsc242596g00001 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Stsc242596g00001 551 ProSiteProfiles Protein kinase domain profile. 355 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242596g00001 551 FunFam Cysteine-rich receptor-like protein kinase 25 147 253 - -
Stsc242596g00001 551 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 51 496 - -
Stsc242596g00001 551 FunFam Os07g0541700 protein 431 505 - -
Stsc242596g00001 551 Gene3D - 31 137 IPR038408 -
Stsc242596g00001 551 Gene3D - 148 253 IPR038408 -
Stsc242596g00001 551 Pfam Salt stress response/antifungal 155 251 IPR002902 -
Stsc242596g00001 551 Pfam Salt stress response/antifungal 39 135 IPR002902 -
Stsc242596g00001 551 Gene3D Phosphorylase Kinase; domain 1 314 430 - -
Stsc242596g00001 551 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Stsc242596g00001 551 MobiDBLite consensus disorder prediction 263 284 - -
Stsc242596g00001 551 ProSiteProfiles Gnk2-homologous domain profile. 32 138 IPR002902 -
Stsc242596g00001 551 SMART serkin_6 355 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242596g00001 551 Pfam Protein kinase domain 356 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242596g00001 551 ProSiteProfiles Gnk2-homologous domain profile. 145 253 IPR002902 -
Stsc242596g00001 551 FunFam Cysteine-rich receptor-like protein kinase 10 316 430 - -
Stsc242596g00001 551 Gene3D Transferase(Phosphotransferase) domain 1 431 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242596g00001 Stsc-Chr242596 3613 10554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242596g00001 16 496 Receptor kinase-like Gene Family AT4G05200 49.177 2.32e-144 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc242596g00001 Pkinase 2.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242596g00001 - - aip:107616499 800.431