Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242580g00001 ATGGCACTTTTAGGTGCTTCTTCGTCTTCTTCTTCTCGAGCAACTGCCACCCTTCGATATGATGTGTTTATCAACTTCAGAGGTGAGGACACACGTAACACCTTCACCAGCCATCTTCATTCTGCTCTCTGCAGAAACGACATCGACACCTTCGTTGATGATTACAGAATCCCGAAAGGAGATGCCATCTGGAAAGGACTTGTTGAGGCCATCAGAGACTCAAAGTTGTTTCTTGTTATCTTCTCCGAAAACTATGCTTCCTCTAAGTGGTGCTTGAGAGAGCTCGCTGAGATCATGGAATGCAGGAAAAAGAATGAAAATGTTATTCATGTGATTCCAGTGTTCTACAAAATAAAGCCCACAGATGTTCGCAAGCAGACCGGAAGTTACCACATAGCATTTGAGGAGCATAAGAGATCTTCAGATCATCGCGATGTGCAGCAATGGAGGACTGCACTCTTTGAAGCTTCCAGTCTTTCAGGCTTCTATTGCGATGGCAGCAGGGAAGAAGCAAAGTTGATTGAAGAAATTGTGGAAACAATTTTGCCAAAACTGAATAAGAATCGCTATAGAGACGAACACAAAAGCCCTTTTATTTGCAACAGAAACTATGCCTCTGTTAAATCCTCACTCAGATTAAAGTTGGAAAAAGTTCATGTGATTGGAATCTGGGGTATGGCCGGTATTGGCAAGACAACCATTGCTACTGCTCTTTTTAATGAATGTTCTTCAGAATACGAAGGTCGTTGCTTCTTAACCTTTTCAAAAGGATTAGAAGGGCAAGGTGTTAACCACGTATGCGCTAGAATTCTTTCTCAATTACTAAATCATCAAGATCTTCGTATTGATAACATCCAAGTAATAGACTCTCGTATTATCCGAAAACTCAAGCATATGAAGGTTTTCATTGTGCTAGATGATGTGACTAATTCACTGCAAATTCTAACTAACTTGATTCAAATGTTTCATGATTGCTTGGGTGTCGGTAGTAGAATCATTTTGGCAGCAAGGGACAGAAATGTGCTTACAAGTGGAGGAGTTGAAGAAATCCATGAAGTGAAGGAAATGGATTTTGAGGACTCCCTTGAACTTTTTAGCTATTATGCCTTTAATGCTTCTCAACCTAAAGAGGATTATTACCAGCTATCAACAAGGGTCGTAGCAGATTATGCCCAAGGGATGACATTAGCATTAACAATTTTGGGATCATTTCTTAAAACCAAGGGAGAAAGGGAATGGGATAGTGCATTGAGAAAACTAAGAAAGTATCCCAATGCAGATATTCAGCAAGTGTTGAGGTCGAGTTATGATGCATTAGATGATGATGAAGAAAACATCCTTTTAGATGTTGCATGCTTTTTCATTGGGCATAAAATGGAGGAAGTAATAGGAAGATTAAATTCGTTTGGTTTCTTTGCAGACATAGGGATAAAAAACCTACTGGACAAGTCTCTTATAAGTATTAATTCATATAATGATAACAAATTCATAAACATGCATGCCTTGATAAAGGAAATGTGTTGGAAAATCAGTTGTGAGGAACAAAGCAAAAATGGTGGACGACAAACAAGACTGTGGAGTACTGAAGAAGTCTGCAATATATTGCAAGATGAAAGAGATATTCATGGAGTTGAAAGCATGATTGTGGATATAAATCAAATTACAATAGATCCACGTTCAATCTTCATTGCCTTAAGGAAGATGCCAAAGTTAAGGTTACTCGCTTTAAGAGGAAATATCAACCCAGATATTGTATGGAACAGAGAGCTTCCAGAGGATTTTCAACTTCCTAATGACTTGAGGTATGTAGAGTGGAATGAATGCCCACTTAAGTTTGTGCCCTCCATTTGTTGGCCTAAAATGCTTGTTGAGCTTTCCTTCCATGGTAGTGATGTTGAAAAACTTTGGGATGCAGTACAGGATGTACCAAGTTTGGAGAAACTTGACCTCCGCCGCTGCAAACGCTTGAAAGAGTGCCCAAATTTGGCAGGTGCCCCGAATCTCAAACTTGTAACATTCTTTGGATGTGAAAGCTTACAAGATGTTCATCCATCTATTTTCTCTCACTCCAAGATTGAAGAAATATATGTGAGCTATTGCACATCGCTGAAGAGGCTTTGCAGTGACTATTGTCCACCCTCTCTTCGTGGCTTGTGGGCCACTGGTTGCTCGAATTTGGAAGAATTCTCAATCCCGATGAACGCTGATAATTCCAAATTATTGGAGTTATGTTTAGCACGAACGGCTTTGAGCCAAGTGCCGTCCACTATTATGAATCTCAAAAATATTGGGTGTTTCGGGTTTGACATCAGTTACTCTCTTGAGAAACTTCCTCCAAACCTTGCCCGCACGATTTTACTCATGGATCCAATTAAATATGAAGACGACCCATACATCATCTTAAGTAGAATATTTCCTTCCCCTCCCTTCTTGTGTCTCAAGCAATTAATTTTCTTCGAATGTCAGAGCTTGTCTAAACTCCCAGACGACATTCATGTCTTACAATCATTGCAAGTATTAGAAGTGGAAAGTTGTCCTGTCATTACAACTTTGCCGGAAAGCATTAAGAATCTTCAACAGCTCATGGATATTTACATCTATAATTGTGAAATGCTTCAATACATACCCCCACTTCCCCCATCTGTTCTATCATTTTGTGCAGTACACTGCAAATCTGTGGAGACAGTCTCATCAAGTTTAACCAGTGAACCATCCAGGAACCACTGGGCATCTTTTAAATTCCATAACTGCACAAAGTTGGATGATCATGCATATATACACGTTTTGAAAGACTTGAAATCCAGGGTAGAACTTGTGGCAAGTGATGGTGCAAACAAGAATAATGCTAATACATTCTGCTATTATTTGCCAACTGAAGAGAGCATGCTTATTAATGATTGGTCCCCAAGCTACTACCATCCAGAAGGTTCATCATTCTTCGTTGCAGTCCCTCCAGATGACGAGATTATTTCTTCTTGTCTTGTTCTCTGCATGTTGCTTTCTAACTACCAATCTTGGAAATTCATCAACAGTATGCGTTTTGAATGTAGCTGCTACATATCAGAAAGGGATTGCAACGAACGGGAATGCATAGCAGCTCGTGGGGTTAGAGTAAGGTTGACCAGTCGTATTCGCTCTATGTTTGGAGCGAAAATGGTGTCAGATCAATATCATATGGTGGTATGGTATGATTCAAAGTTTTCCAACGAGATAATGAAAGCAATCAAGGAGAGAAACAGGGGCAATACTACTTGCAATCCTATCCTTATATTTGAATTCGATGCAAAAACAGTGAATAATGAGGAAGTATGGATAAAAGGGTGTGGGATCCATTGGATGCATGTAGATGTCAAAGATGAAGGAGAGGTTAGTTATCTTGGTTTGTCTAGTGGAGTCGAAACACATCCTCCATCAGGCCAAACTCCAGGCTTTATCTCAACTGCTGCCACAGCTTCTCCTAACGTTATTACAGCAGCCGCTGCCTCTACTACGCCGACCAACCCCGCTGAAGATGAAGACCTAGAGGCTCCACAGGTTGACACTTGGGAGGAGACCAAGAATCTATCTTCGGGCTCAGATACTGCAAAAATCGAGCCTCCATTATTAGGGAAGGCTGATCAAGAGAGATTCACTGTAGAAGTGGTCGATCAAATAAATGAAGCACTCGCATGCTTGAACCATCCTCTGGAGGAGATCTCAGGCAGCAGCTCGAAGATTTCGGAGGAAACTAACTCAGCCTTGGTGGCATTCATCGAGGAAGTCTTGGTCTACCCTTCTTTGCTCCAACAAGCTCGAAAGGTCCGTTCTGAGTCTATCCAGGCTTTGGAAGATCATGACCGCCAGCTCAAGAAATATGAAGGGATGGCCATAGAAAACAAGAATGCAGATTTGATCAGCAAAGTCGAGAAGATCTATGCGTCTGATGAATCTCCTGCCCGGGTTCCACTGGTTGAATCTGTTAATCAAGCCACCCGTGACCTGGAGCAAGCTGAAAGAAGGCTCCAGAGGTTGAGGCAGCGTCAACAAGACTTAAAATTGCAGCTCAGGATCTATTTTGGATAG 4062 0.4116 MALLGASSSSSSRATATLRYDVFINFRGEDTRNTFTSHLHSALCRNDIDTFVDDYRIPKGDAIWKGLVEAIRDSKLFLVIFSENYASSKWCLRELAEIMECRKKNENVIHVIPVFYKIKPTDVRKQTGSYHIAFEEHKRSSDHRDVQQWRTALFEASSLSGFYCDGSREEAKLIEEIVETILPKLNKNRYRDEHKSPFICNRNYASVKSSLRLKLEKVHVIGIWGMAGIGKTTIATALFNECSSEYEGRCFLTFSKGLEGQGVNHVCARILSQLLNHQDLRIDNIQVIDSRIIRKLKHMKVFIVLDDVTNSLQILTNLIQMFHDCLGVGSRIILAARDRNVLTSGGVEEIHEVKEMDFEDSLELFSYYAFNASQPKEDYYQLSTRVVADYAQGMTLALTILGSFLKTKGEREWDSALRKLRKYPNADIQQVLRSSYDALDDDEENILLDVACFFIGHKMEEVIGRLNSFGFFADIGIKNLLDKSLISINSYNDNKFINMHALIKEMCWKISCEEQSKNGGRQTRLWSTEEVCNILQDERDIHGVESMIVDINQITIDPRSIFIALRKMPKLRLLALRGNINPDIVWNRELPEDFQLPNDLRYVEWNECPLKFVPSICWPKMLVELSFHGSDVEKLWDAVQDVPSLEKLDLRRCKRLKECPNLAGAPNLKLVTFFGCESLQDVHPSIFSHSKIEEIYVSYCTSLKRLCSDYCPPSLRGLWATGCSNLEEFSIPMNADNSKLLELCLARTALSQVPSTIMNLKNIGCFGFDISYSLEKLPPNLARTILLMDPIKYEDDPYIILSRIFPSPPFLCLKQLIFFECQSLSKLPDDIHVLQSLQVLEVESCPVITTLPESIKNLQQLMDIYIYNCEMLQYIPPLPPSVLSFCAVHCKSVETVSSSLTSEPSRNHWASFKFHNCTKLDDHAYIHVLKDLKSRVELVASDGANKNNANTFCYYLPTEESMLINDWSPSYYHPEGSSFFVAVPPDDEIISSCLVLCMLLSNYQSWKFINSMRFECSCYISERDCNERECIAARGVRVRLTSRIRSMFGAKMVSDQYHMVVWYDSKFSNEIMKAIKERNRGNTTCNPILIFEFDAKTVNNEEVWIKGCGIHWMHVDVKDEGEVSYLGLSSGVETHPPSGQTPGFISTAATASPNVITAAAASTTPTNPAEDEDLEAPQVDTWEETKNLSSGSDTAKIEPPLLGKADQERFTVEVVDQINEALACLNHPLEEISGSSSKISEETNSALVAFIEEVLVYPSLLQQARKVRSESIQALEDHDRQLKKYEGMAIENKNADLISKVEKIYASDESPARVPLVESVNQATRDLEQAERRLQRLRQRQQDLKLQLRIYFG 1353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242580g00001 1353 Gene3D Ribonuclease Inhibitor 712 899 IPR032675 -
Stsc242580g00001 1353 Gene3D Ribonuclease Inhibitor 539 711 IPR032675 -
Stsc242580g00001 1353 ProSiteProfiles TIR domain profile. 18 185 IPR000157 GO:0007165
Stsc242580g00001 1353 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 777 IPR044974 GO:0006952
Stsc242580g00001 1353 Coils Coil 1320 1347 - -
Stsc242580g00001 1353 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 187 - -
Stsc242580g00001 1353 Pfam NB-ARC domain 217 439 IPR002182 GO:0043531
Stsc242580g00001 1353 Gene3D - 188 350 IPR027417 -
Stsc242580g00001 1353 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 162 IPR035897 -
Stsc242580g00001 1353 Gene3D - 356 440 IPR042197 -
Stsc242580g00001 1353 Gene3D - 17 187 IPR035897 -
Stsc242580g00001 1353 SUPERFAMILY L domain-like 562 917 - -
Stsc242580g00001 1353 SMART till_3 19 159 IPR000157 GO:0007165
Stsc242580g00001 1353 Pfam TIR domain 20 191 IPR000157 GO:0007165
Stsc242580g00001 1353 PRINTS Disease resistance protein signature 220 235 - -
Stsc242580g00001 1353 PRINTS Disease resistance protein signature 391 405 - -
Stsc242580g00001 1353 PRINTS Disease resistance protein signature 295 309 - -
Stsc242580g00001 1353 PRINTS Disease resistance protein signature 640 656 - -
Stsc242580g00001 1353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 449 IPR027417 -
Stsc242580g00001 1353 SUPERFAMILY "Winged helix" DNA-binding domain 427 535 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242580g00001 Stsc-Chr242580 1105 11786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242580g00001 13 861 WRKY Transcription Factor Family AT4G12020 26.999 2.90e-64 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242580g00001 - - aip:107614877 1493.02