Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242579g00002 ATGGTGGATAGGATGTTGAGGAAGCAGGTTGAACAAAATGATGAACAAGCTGTGACTGTGGCTTTCTATTCAGATGAGAAAGCTCAACGGAGGTTTTCAATGACCATGGTCACAAACGGCGAGTTACAAAAATTTGCCAGCTCTATGAAGGCTTCAGCAGCAGAAGCAACATCCTCTCGTGGTGAGGCTAGGTCATCAGCTGTAATTCGAGCCGAAGAGATCCGGTCGGGTTTGCAAATGGAATACCCTAGTTTTGTGAAGTCATTAGTGAGATCACATGTGGCTAGTTGTTTCTGGATGGGTCTGCCTGTGGCATTCTGTAAGAAGCACTTGCCGGATAAGGATACAACGATGACTTTGGAAGATGAATCCGGCAAAGAATACAAGATGAAGTACATCGCATGCAAAACGGGATTGAGCGCAGGTTGGAGACAGTTTTCTGCTGTGCACAAGTTGCAGGAGGGTGATGTCTTGGTGTTCCAGTTAGTTGAACCTACCAAGTTTAAGATTTGTATAATAAGAGCGGATAATCTGAGGGAAGTAGATGGGGCGCTTTCGCTTATGAATCTAGACAGTTATGCAAGACAAAAGCAGAGAGATAAAGAAAACCAAGATATTGATGCTTTAGAGGCTAGTAATACAAAGAGAAAACCCGGAAAACCTGTCCCAATTGATGTCCAAAAGAAAAAGCGGACCGTGCTGTCAAAACCAAGTCCTAAATCCATCCAACCGGCACCATCCGAAAACGATAGCGAAGAAGCACTCTCAGAAGTATTTGAGGGATTTAGAACGCTTGACTTCAAAGATGTCAAAGGATTTGAATATTTCAGCATCATAGTCGATGGCGTGCCGTTAGATGCGGAGTTCCCTAATGAGGTTAGAAACAAATACTACAAGCTATGCCAGAGCCAACGCGCTTTCCTTCATGATAACCTCACCCGGGGGATGAACTACAAGCTAGTTGTTGGAATTATAACCGAAACTGTTAACATTGCGGACGCCATTAAAGTTAGCGTGCTAGCCACGCCACGATATGATTTCTCGAATTGGGACAAAACCCTGCTTGCCTTTGAGCATATGGGCATGAATGTTGAGTTCTTGAGGGTGAGGTTGCGGCGATTGGTGAGCATTGCATATGAAACTGATGATGCCTTAGAGACCAGAAGATACTTCCAGTATAAGAATCAACACTCGCGAGCAGATGACGAGATAAAGAATATGGAGTCCAAGCTGGAAGATTTGAAAGGAGCTTGTAATGATTTTAGTTCTTACATTAAGAGTTTGAAGCATAAAGCTGAAGGTCATCATAACAAGTTTCAGAAAGAGGCTGGTGCTCCTTGGTGA 1344 0.4375 MVDRMLRKQVEQNDEQAVTVAFYSDEKAQRRFSMTMVTNGELQKFASSMKASAAEATSSRGEARSSAVIRAEEIRSGLQMEYPSFVKSLVRSHVASCFWMGLPVAFCKKHLPDKDTTMTLEDESGKEYKMKYIACKTGLSAGWRQFSAVHKLQEGDVLVFQLVEPTKFKICIIRADNLREVDGALSLMNLDSYARQKQRDKENQDIDALEASNTKRKPGKPVPIDVQKKKRTVLSKPSPKSIQPAPSENDSEEALSEVFEGFRTLDFKDVKGFEYFSIIVDGVPLDAEFPNEVRNKYYKLCQSQRAFLHDNLTRGMNYKLVVGIITETVNIADAIKVSVLATPRYDFSNWDKTLLAFEHMGMNVEFLRVRLRRLVSIAYETDDALETRRYFQYKNQHSRADDEIKNMESKLEDLKGACNDFSSYIKSLKHKAEGHHNKFQKEAGAPW 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242579g00002 447 CDD B3_DNA 83 174 IPR003340 GO:0003677
Stsc242579g00002 447 MobiDBLite consensus disorder prediction 196 253 - -
Stsc242579g00002 447 ProSiteProfiles B3 DNA-binding domain profile. 85 176 IPR003340 GO:0003677
Stsc242579g00002 447 Coils Coil 390 417 - -
Stsc242579g00002 447 Gene3D - 62 178 IPR015300 -
Stsc242579g00002 447 MobiDBLite consensus disorder prediction 236 250 - -
Stsc242579g00002 447 Pfam B3 DNA binding domain 85 175 IPR003340 GO:0003677
Stsc242579g00002 447 SMART B3_2 85 176 IPR003340 GO:0003677
Stsc242579g00002 447 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 41 177 IPR044837 -
Stsc242579g00002 447 SUPERFAMILY DNA-binding pseudobarrel domain 79 176 IPR015300 -
Stsc242579g00002 447 MobiDBLite consensus disorder prediction 196 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242579g00002 Stsc-Chr242579 9101 12938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242579g00002 62 204 B3 DNA Binding Superfamily AT3G19184 44.444 3.18e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc242579g00002 B3 7.1e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242579g00002 - - adu:107479414 754.977