LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc242579g00002	ATGGTGGATAGGATGTTGAGGAAGCAGGTTGAACAAAATGATGAACAAGCTGTGACTGTGGCTTTCTATTCAGATGAGAAAGCTCAACGGAGGTTTTCAATGACCATGGTCACAAACGGCGAGTTACAAAAATTTGCCAGCTCTATGAAGGCTTCAGCAGCAGAAGCAACATCCTCTCGTGGTGAGGCTAGGTCATCAGCTGTAATTCGAGCCGAAGAGATCCGGTCGGGTTTGCAAATGGAATACCCTAGTTTTGTGAAGTCATTAGTGAGATCACATGTGGCTAGTTGTTTCTGGATGGGTCTGCCTGTGGCATTCTGTAAGAAGCACTTGCCGGATAAGGATACAACGATGACTTTGGAAGATGAATCCGGCAAAGAATACAAGATGAAGTACATCGCATGCAAAACGGGATTGAGCGCAGGTTGGAGACAGTTTTCTGCTGTGCACAAGTTGCAGGAGGGTGATGTCTTGGTGTTCCAGTTAGTTGAACCTACCAAGTTTAAGATTTGTATAATAAGAGCGGATAATCTGAGGGAAGTAGATGGGGCGCTTTCGCTTATGAATCTAGACAGTTATGCAAGACAAAAGCAGAGAGATAAAGAAAACCAAGATATTGATGCTTTAGAGGCTAGTAATACAAAGAGAAAACCCGGAAAACCTGTCCCAATTGATGTCCAAAAGAAAAAGCGGACCGTGCTGTCAAAACCAAGTCCTAAATCCATCCAACCGGCACCATCCGAAAACGATAGCGAAGAAGCACTCTCAGAAGTATTTGAGGGATTTAGAACGCTTGACTTCAAAGATGTCAAAGGATTTGAATATTTCAGCATCATAGTCGATGGCGTGCCGTTAGATGCGGAGTTCCCTAATGAGGTTAGAAACAAATACTACAAGCTATGCCAGAGCCAACGCGCTTTCCTTCATGATAACCTCACCCGGGGGATGAACTACAAGCTAGTTGTTGGAATTATAACCGAAACTGTTAACATTGCGGACGCCATTAAAGTTAGCGTGCTAGCCACGCCACGATATGATTTCTCGAATTGGGACAAAACCCTGCTTGCCTTTGAGCATATGGGCATGAATGTTGAGTTCTTGAGGGTGAGGTTGCGGCGATTGGTGAGCATTGCATATGAAACTGATGATGCCTTAGAGACCAGAAGATACTTCCAGTATAAGAATCAACACTCGCGAGCAGATGACGAGATAAAGAATATGGAGTCCAAGCTGGAAGATTTGAAAGGAGCTTGTAATGATTTTAGTTCTTACATTAAGAGTTTGAAGCATAAAGCTGAAGGTCATCATAACAAGTTTCAGAAAGAGGCTGGTGCTCCTTGGTGA	1344	0.4375	MVDRMLRKQVEQNDEQAVTVAFYSDEKAQRRFSMTMVTNGELQKFASSMKASAAEATSSRGEARSSAVIRAEEIRSGLQMEYPSFVKSLVRSHVASCFWMGLPVAFCKKHLPDKDTTMTLEDESGKEYKMKYIACKTGLSAGWRQFSAVHKLQEGDVLVFQLVEPTKFKICIIRADNLREVDGALSLMNLDSYARQKQRDKENQDIDALEASNTKRKPGKPVPIDVQKKKRTVLSKPSPKSIQPAPSENDSEEALSEVFEGFRTLDFKDVKGFEYFSIIVDGVPLDAEFPNEVRNKYYKLCQSQRAFLHDNLTRGMNYKLVVGIITETVNIADAIKVSVLATPRYDFSNWDKTLLAFEHMGMNVEFLRVRLRRLVSIAYETDDALETRRYFQYKNQHSRADDEIKNMESKLEDLKGACNDFSSYIKSLKHKAEGHHNKFQKEAGAPW	447

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc242579g00002	447	CDD	B3_DNA	83	174	IPR003340	GO:0003677
Stsc242579g00002	447	MobiDBLite	consensus disorder prediction	196	253	-	-
Stsc242579g00002	447	ProSiteProfiles	B3 DNA-binding domain profile.	85	176	IPR003340	GO:0003677
Stsc242579g00002	447	Coils	Coil	390	417	-	-
Stsc242579g00002	447	Gene3D	-	62	178	IPR015300	-
Stsc242579g00002	447	MobiDBLite	consensus disorder prediction	236	250	-	-
Stsc242579g00002	447	Pfam	B3 DNA binding domain	85	175	IPR003340	GO:0003677
Stsc242579g00002	447	SMART	B3_2	85	176	IPR003340	GO:0003677
Stsc242579g00002	447	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	41	177	IPR044837	-
Stsc242579g00002	447	SUPERFAMILY	DNA-binding pseudobarrel domain	79	176	IPR015300	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc242579g00002	Stsc-Chr242579	9101	12938	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc242579g00002	62	204	B3 DNA Binding Superfamily	AT3G19184	44.444	3.18e-36	133

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Stsc242579g00002		B3	7.1e-18	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc242579g00002	-		-	adu:107479414	754.977

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