Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242575g00003 GCTCACACAATAGGGAAAGCAAGATGTACAACTTTCAGATCAAGGATTTACAATGAAACCAACATAGATCCCTCTTTTGCAAAATCATTGCAAAAAAATTGTCCAATTTCAGGTGGTGATAACAACTTAGCCTCTTTGGATACTAACACTCCAATAATTGATCTATTTGACAATGGATACTTCAGAGATTTAGTGAACAAAAAGGGTCTTTTGCATTCGGATCAAGTACTCTTTGATGGCGGTTCCACAGATTCACAAGTTCAAAGTTATGTGAAAAATCCAAATCTCTTCCAAATTGATTTTGCTAAGGCAATGGTTAAGATGGGAAAACTTAGCCCACTAATCTCAGCCAATGCTCTTGCTACAACATCTTTCTCATCGCCATCATCATTATTGTCACCAAATTACTATGGCCATTCGTGCCCTCAGGCTTTGAACACCATAAGAAGAGTGGTGGAGAATGCTGTTCAAACAGAGCCACGCATGGGTGCTTCTTTGCTACGCTTGCACTTCCATGATTGCTTTGTTAATGGTTGTGATGGTTCAATTCTTCTAGATCCTACATCCACCATTGACAGTGAAAAAAATGCATTTTCTAATAAAAACTCTGTTAGAGGATTTGAAGTGGTGGACGAAATCAAGAAGGCAGTGGATAAAGCTTACAGAAAACCAATTGTTTCTTGCGCTGACATTTTGGCAGTTGCTGCTAGAGATTCTGTTGTTGCGTTAGGAGGGCCAACATGGAAGGTGAGACTTGGTAGAAGAGACTCAACCACAGCAAGCCGCAATGATGCAAATAAAAACCTTCCCATACCATCTTCTAGCCTCTCTCAACTCATTTCAATCTTCAACAACCATGGCCTAAATGAAAAGGACCTTGTGGTTCTCTCCGGCGCCCACACAATCGGTTTTGCACGCTGTGTTTCTTTTAAGGACCATATCTACAACGATACCAACATCAACCCTTACTTTGTGAAGAGGCTCAAGTTCATTTGCCCTAAAAATGGTGGTGGAAACCCTAATATTATTGCGCCGTTGGACGCGGCCACGGCAGTGAAGTTTGACGCCTCCTACTATGGTGACTTGGTTCACAAGCAAGGGCTTTTGCATTCCGATCAAGAATTGTTTAATGGTGGATCCACGGATGGATTGGTTAAGAAATATTGGTATGATCATGAAGGATTTTATAAGGATTTTGCTGAATCTATGATTAAAATGGGAAACATAAAGCCACTCACCGGGAAACATGGTGAAATTCGTTTGAATTGTAGGAAAGTGAATAAATATTATTAA 1293 0.4029 AHTIGKARCTTFRSRIYNETNIDPSFAKSLQKNCPISGGDNNLASLDTNTPIIDLFDNGYFRDLVNKKGLLHSDQVLFDGGSTDSQVQSYVKNPNLFQIDFAKAMVKMGKLSPLISANALATTSFSSPSSLLSPNYYGHSCPQALNTIRRVVENAVQTEPRMGASLLRLHFHDCFVNGCDGSILLDPTSTIDSEKNAFSNKNSVRGFEVVDEIKKAVDKAYRKPIVSCADILAVAARDSVVALGGPTWKVRLGRRDSTTASRNDANKNLPIPSSSLSQLISIFNNHGLNEKDLVVLSGAHTIGFARCVSFKDHIYNDTNINPYFVKRLKFICPKNGGGNPNIIAPLDAATAVKFDASYYGDLVHKQGLLHSDQELFNGGSTDGLVKKYWYDHEGFYKDFAESMIKMGNIKPLTGKHGEIRLNCRKVNKYY 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242575g00003 430 PANTHER PEROXIDASE 72-RELATED 131 426 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 ProSitePatterns Peroxidases proximal heme-ligand signature. 292 302 IPR019793 -
Stsc242575g00003 430 SUPERFAMILY Heme-dependent peroxidases 1 119 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 ProSiteProfiles Plant heme peroxidase family profile. 131 427 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 PRINTS Plant peroxidase signature 291 303 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 PRINTS Plant peroxidase signature 345 360 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 PRINTS Plant peroxidase signature 401 414 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 PRINTS Plant peroxidase signature 141 160 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 PRINTS Plant peroxidase signature 225 235 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 PRINTS Plant peroxidase signature 205 218 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 PRINTS Plant peroxidase signature 361 378 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 PRINTS Plant peroxidase signature 165 185 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 SUPERFAMILY Heme-dependent peroxidases 132 427 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 FunFam Peroxidase 135 279 - -
Stsc242575g00003 430 Gene3D Peroxidase, domain 2 1 108 - -
Stsc242575g00003 430 Pfam Peroxidase 1 92 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 Pfam Peroxidase 149 388 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 FunFam Peroxidase 1 108 - -
Stsc242575g00003 430 ProSitePatterns Peroxidases active site signature. 163 174 IPR019794 GO:0004601
Stsc242575g00003 430 ProSiteProfiles Plant heme peroxidase family profile. 1 114 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 FunFam Peroxidase 270 406 - -
Stsc242575g00003 430 Gene3D Peroxidase, domain 2 270 406 - -
Stsc242575g00003 430 PRINTS Haem peroxidase superfamily signature 244 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 PRINTS Haem peroxidase superfamily signature 292 307 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 PRINTS Haem peroxidase superfamily signature 163 177 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 PRINTS Haem peroxidase superfamily signature 347 362 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 PRINTS Haem peroxidase superfamily signature 226 243 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242575g00003 430 CDD secretory_peroxidase 135 426 IPR033905 GO:0004601|GO:0042744
Stsc242575g00003 430 Gene3D - 135 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242575g00003 Stsc-Chr242575 18660 22794 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242575g00003 132 427 Peroxidase AT5G05340 57.432 8.31e-122 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242575g00003 K00430 - gmx:100802035 438.728