LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc242565g00001	ATGCACCATTTCGCCTCGCATGCACCATCTAGGTGCAGGATCAGGTGTACCAACGACTGTGGGATCGACACATGTCAGATTGGGGATTGGTTTTCCCTGTTCCGACCGTACACACTCGCAAGCATGGCATTTCTCTCCCACTCTCCAAATTCAAATTCAATTGCCACATTTCATAACTCCCTCACCTTCGCCACCACCACCGCCACCGACGATCCTCTCTTACTATTCCTCTGGAATGTCAAGAAAGCTCTAGAAGGTTCCAGCAGTTCCAACCAGAACCTGATTAACTTGCTAGAAGATTGCATTAGAAGCTTCAAGGATAGCGAACAGTACCGAAACGACGTCAGATTTCTCAAGATTTGGCTCCTCTATATGGGTGTTAGTTCAGATTTTGAAAGTGTTTTCAAGGAAATGCTGAACTGTAATGTGTCTACCAAAAATGCTTCACTCTATGTTTGGTCTGCAAGTTTCTTTGAGATGAAAGGGATGCTCCGTCATGCCCTCACAATCTACAACCTTGGCATCTCCAGGAACGCAGAGCCAATTGAGTGGTTGAAGAAGGCACAGGCATTATGTCACCAGAGAATATCTGAAGCTTGGAGGGCTGCTAAATGCCAGAAGATTGATCATAAGGGATCCACAGAGTTGGGAAACACTGGCATTAATCCATGGAATTCCTCCATTATGGATGACCTGATGAAGAAGATAAATCCGATCATTAAAAAATTTCATGGGTATCACTTGAACACTAAATCTTATACAGGGAAAGTGGCCTTATCTACTTTGAAGAATGCATCAAGGAACAAAGTTATAGAGATAGGCGGGAAGAAGTACCATATCAAAGGTTGTGCTGGACAGGGTGGTTTTGCTCAAGTATACAAGGCCTTTGTCAACAGTGATCCTAATGATGTTGTTGCACTAAAGATACAAAGGCCAGCTTTCCCCTGGGAATTTTACATGTATCGTCAGCTTGATATTCGGATCACAGGCAGAGAAAGGTCAAGCTATGGTTCTGCTCATAGAATTCATCTGTATGCTGACTGTAGCATACTCATCTGTGACTATTTAGCTCATGGGACTCTACAGGATGTCATAAACACATATGTGGTCCAAAGGAAACCCATGGAAGAAGTATTATGCATTTATTACACGATAGAAATGCTACACATGGTTGAAACTTTGCATGGTGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTTATTTGCTATGCTAGGGATAATCTTACTGAAGAAGGGTTCTTTGACCGAAGTGGTCCTTGGTGTGATCAGGGTCTTTGCCTTGTAGACTGGGGAAGAGGGATCGTTCTGGATCTCTTTCCAGAGGACACAGTATTTAAGGGTGACTGCAGAACTTCTGGTTTTCGCTGCATTGAGATGCAAGAGGATAAGCCATGGAAATTTCAGGTAGATGCGTATGGCCTTTGTGTTGTTGTCCATATGATGTTGCATAACTGCTATATGGAGATTGCCAAACAAGAATCATCTGATGGCGGCTACATGTATCTTCCCAAACAACCCTTTAAACGTTACTGGAATGTTGCTCTCTGGAAGAATTTCTTCACCAAGATGCTAAATCAATACCCTGGCAATGACGATAGAAGGTTGCTGCAGGAGTTGAGAAAGTCCTTCCAGGACTATATAAGTTCTGATCCAAAGATGATAAAGACACTAAAGGAGTTACTTGCAAAGCAAAGGATTTCTATGTGTTCTGCTTAG	1746	0.4284	MHHFASHAPSRCRIRCTNDCGIDTCQIGDWFSLFRPYTLASMAFLSHSPNSNSIATFHNSLTFATTTATDDPLLLFLWNVKKALEGSSSSNQNLINLLEDCIRSFKDSEQYRNDVRFLKIWLLYMGVSSDFESVFKEMLNCNVSTKNASLYVWSASFFEMKGMLRHALTIYNLGISRNAEPIEWLKKAQALCHQRISEAWRAAKCQKIDHKGSTELGNTGINPWNSSIMDDLMKKINPIIKKFHGYHLNTKSYTGKVALSTLKNASRNKVIEIGGKKYHIKGCAGQGGFAQVYKAFVNSDPNDVVALKIQRPAFPWEFYMYRQLDIRITGRERSSYGSAHRIHLYADCSILICDYLAHGTLQDVINTYVVQRKPMEEVLCIYYTIEMLHMVETLHGVGLIHGDFKPDNLLICYARDNLTEEGFFDRSGPWCDQGLCLVDWGRGIVLDLFPEDTVFKGDCRTSGFRCIEMQEDKPWKFQVDAYGLCVVVHMMLHNCYMEIAKQESSDGGYMYLPKQPFKRYWNVALWKNFFTKMLNQYPGNDDRRLLQELRKSFQDYISSDPKMIKTLKELLAKQRISMCSA	581

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc242565g00001	581	Gene3D	-	55	211	-	-
Stsc242565g00001	581	PANTHER	MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1	215	575	IPR015661	GO:0007094
Stsc242565g00001	581	SMART	mad3_bub1_i	50	175	IPR013212	-
Stsc242565g00001	581	Pfam	Protein kinase domain	278	497	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Stsc242565g00001	581	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	399	411	IPR008271	GO:0004672\|GO:0006468
Stsc242565g00001	581	ProSiteProfiles	BUB1 N-terminal domain profile.	57	227	IPR013212	-
Stsc242565g00001	581	ProSiteProfiles	Protein kinase domain profile.	278	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Stsc242565g00001	581	SUPERFAMILY	Protein kinase-like (PK-like)	275	538	IPR011009	-
Stsc242565g00001	581	Pfam	Mad3/BUB1 homology region 1	63	175	IPR013212	-
Stsc242565g00001	581	Gene3D	Transferase(Phosphotransferase) domain 1	275	579	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc242565g00001	Stsc-Chr242565	2501	9716	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc242565g00001	272	416	MAP Kinase Kinase Kinase Kinase	AT3G15220	29.801	7.96e-09	56.6

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	BUB	Stsc242565g00001		Pkinase	7.2e-12	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc242565g00001	K02178		-	gmx:100783171	816.994

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