Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242565g00001 ATGCACCATTTCGCCTCGCATGCACCATCTAGGTGCAGGATCAGGTGTACCAACGACTGTGGGATCGACACATGTCAGATTGGGGATTGGTTTTCCCTGTTCCGACCGTACACACTCGCAAGCATGGCATTTCTCTCCCACTCTCCAAATTCAAATTCAATTGCCACATTTCATAACTCCCTCACCTTCGCCACCACCACCGCCACCGACGATCCTCTCTTACTATTCCTCTGGAATGTCAAGAAAGCTCTAGAAGGTTCCAGCAGTTCCAACCAGAACCTGATTAACTTGCTAGAAGATTGCATTAGAAGCTTCAAGGATAGCGAACAGTACCGAAACGACGTCAGATTTCTCAAGATTTGGCTCCTCTATATGGGTGTTAGTTCAGATTTTGAAAGTGTTTTCAAGGAAATGCTGAACTGTAATGTGTCTACCAAAAATGCTTCACTCTATGTTTGGTCTGCAAGTTTCTTTGAGATGAAAGGGATGCTCCGTCATGCCCTCACAATCTACAACCTTGGCATCTCCAGGAACGCAGAGCCAATTGAGTGGTTGAAGAAGGCACAGGCATTATGTCACCAGAGAATATCTGAAGCTTGGAGGGCTGCTAAATGCCAGAAGATTGATCATAAGGGATCCACAGAGTTGGGAAACACTGGCATTAATCCATGGAATTCCTCCATTATGGATGACCTGATGAAGAAGATAAATCCGATCATTAAAAAATTTCATGGGTATCACTTGAACACTAAATCTTATACAGGGAAAGTGGCCTTATCTACTTTGAAGAATGCATCAAGGAACAAAGTTATAGAGATAGGCGGGAAGAAGTACCATATCAAAGGTTGTGCTGGACAGGGTGGTTTTGCTCAAGTATACAAGGCCTTTGTCAACAGTGATCCTAATGATGTTGTTGCACTAAAGATACAAAGGCCAGCTTTCCCCTGGGAATTTTACATGTATCGTCAGCTTGATATTCGGATCACAGGCAGAGAAAGGTCAAGCTATGGTTCTGCTCATAGAATTCATCTGTATGCTGACTGTAGCATACTCATCTGTGACTATTTAGCTCATGGGACTCTACAGGATGTCATAAACACATATGTGGTCCAAAGGAAACCCATGGAAGAAGTATTATGCATTTATTACACGATAGAAATGCTACACATGGTTGAAACTTTGCATGGTGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTTATTTGCTATGCTAGGGATAATCTTACTGAAGAAGGGTTCTTTGACCGAAGTGGTCCTTGGTGTGATCAGGGTCTTTGCCTTGTAGACTGGGGAAGAGGGATCGTTCTGGATCTCTTTCCAGAGGACACAGTATTTAAGGGTGACTGCAGAACTTCTGGTTTTCGCTGCATTGAGATGCAAGAGGATAAGCCATGGAAATTTCAGGTAGATGCGTATGGCCTTTGTGTTGTTGTCCATATGATGTTGCATAACTGCTATATGGAGATTGCCAAACAAGAATCATCTGATGGCGGCTACATGTATCTTCCCAAACAACCCTTTAAACGTTACTGGAATGTTGCTCTCTGGAAGAATTTCTTCACCAAGATGCTAAATCAATACCCTGGCAATGACGATAGAAGGTTGCTGCAGGAGTTGAGAAAGTCCTTCCAGGACTATATAAGTTCTGATCCAAAGATGATAAAGACACTAAAGGAGTTACTTGCAAAGCAAAGGATTTCTATGTGTTCTGCTTAG 1746 0.4284 MHHFASHAPSRCRIRCTNDCGIDTCQIGDWFSLFRPYTLASMAFLSHSPNSNSIATFHNSLTFATTTATDDPLLLFLWNVKKALEGSSSSNQNLINLLEDCIRSFKDSEQYRNDVRFLKIWLLYMGVSSDFESVFKEMLNCNVSTKNASLYVWSASFFEMKGMLRHALTIYNLGISRNAEPIEWLKKAQALCHQRISEAWRAAKCQKIDHKGSTELGNTGINPWNSSIMDDLMKKINPIIKKFHGYHLNTKSYTGKVALSTLKNASRNKVIEIGGKKYHIKGCAGQGGFAQVYKAFVNSDPNDVVALKIQRPAFPWEFYMYRQLDIRITGRERSSYGSAHRIHLYADCSILICDYLAHGTLQDVINTYVVQRKPMEEVLCIYYTIEMLHMVETLHGVGLIHGDFKPDNLLICYARDNLTEEGFFDRSGPWCDQGLCLVDWGRGIVLDLFPEDTVFKGDCRTSGFRCIEMQEDKPWKFQVDAYGLCVVVHMMLHNCYMEIAKQESSDGGYMYLPKQPFKRYWNVALWKNFFTKMLNQYPGNDDRRLLQELRKSFQDYISSDPKMIKTLKELLAKQRISMCSA 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242565g00001 581 Gene3D - 55 211 - -
Stsc242565g00001 581 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 215 575 IPR015661 GO:0007094
Stsc242565g00001 581 SMART mad3_bub1_i 50 175 IPR013212 -
Stsc242565g00001 581 Pfam Protein kinase domain 278 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242565g00001 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672|GO:0006468
Stsc242565g00001 581 ProSiteProfiles BUB1 N-terminal domain profile. 57 227 IPR013212 -
Stsc242565g00001 581 ProSiteProfiles Protein kinase domain profile. 278 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242565g00001 581 SUPERFAMILY Protein kinase-like (PK-like) 275 538 IPR011009 -
Stsc242565g00001 581 Pfam Mad3/BUB1 homology region 1 63 175 IPR013212 -
Stsc242565g00001 581 Gene3D Transferase(Phosphotransferase) domain 1 275 579 - -
Stsc242565g00001 581 SMART serkin_6 278 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242565g00001 Stsc-Chr242565 2501 9716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242565g00001 272 416 MAP Kinase Kinase Kinase Kinase AT3G15220 29.801 7.96e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Stsc242565g00001 Pkinase 7.2e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242565g00001 K02178 - gmx:100783171 816.994