Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242564g00001 ATGGCTTCAAGAAGGATTGTTTCCTCTCTGATTCGATCTTCTCTCCGCCGCGGATCTCAATCCAACCCTTCCATTGCCGCATCGGCTTCCAGGCTCGCCTCTCGGAGCCGTAGCGGTGCTTCTCCAGCCGGATATATCTTCAATCGCGTTGCCGAGTATGCTACCTCCGCCGCCGCCGCCGCAGCTCCGTCACCACCGCCTCCAGCAAAGAAGGAATCCGGCGGTGGGGGTAAGATCACCGATGAGTTCACTGGTAAGGGTGCGATCGGTCAAGTGTGCCAGGTCATCGGTGCCGTCGTCGATGTGAGATTCGAGGAGGGTTTGCCTCCCATCCTTACTGCGCTCGAGGTGCTAGATCACTCTTCCAGGCTGGTGCTCGAGGTGGCTCAGCATTTGGGCGAGGGTGTTGTCAGAACCATTGCTATGGATGGTACTGAAGGTGTTGTCAGAGGCTGGCGCGTGCTTAACACCGGCTCCCCTATCACTGTTCCTGTTGGTAGGGCAACCCTTGGACGTATCATCAATGTCATTGGAGAGCCTATTGATGAGAGGGGTGATCTAACTACCGAGCATTACTTGCCCATTCACAGAGAAGCTCCTGCTTTTGTTGAGCAAGCCACTGAGCAACAGATTCTTGTCACAGGAATTAAGGTCGTCGATCTGCTTGCACCATACCAAAGAGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTGGGTAAAACTGTGCTTATTATGGAGCTCATTAACAACGTTGCCAAGGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAAAGAACCCGTGAGGGTAATGACTTGTACAGAGAAATGATGGAGAGTGGTGTCATCAAGCTAGGTGAAAAGCAGAATGAAAGCAAATGCGCTCTTGTGTACGGTCAAATGAATGAGCCCCCGGGTGCTCGTGCCCGTGTTGGTCTTACTGGGCTTACTGCTAATTCAGAGGTGTCTGCTTTGCTGGGACGTATCCCATCTGCTGTGGGTTACCAACCTACCTTGGCCACTGATCTTGGAGGTCTTCAAGAGCGAATCACAACCACCAAGAAGGGTTCAATTACCTCTGTCCAGGCTATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCTACCACCTTCGCTCACTTGGATGCTACAACTGTGTTATCACGACAGATCTCTGAGTTGGGTATCTATCCTGCTGTGGACCCCTTGGATTCCACATCTCGTATGCTTTCCCCACTCATCTTGGGTGAGGATCACTACGAAACTGCTCGTGGTGTCCAGAAAGTTCTGCAAAACTACAAGAATCTTCAAGATATTATTGCCATTTTGGGAATGGACGAGCTCAGTGAAGACGATAAATTGACTGTTGCCCGTGCCCGTAAGATTCAAAGATTCTTGAGCCAGCCTTTCCATGTTGCAGAAGTATTCACGGGTGCCCCAGGCAAATATGTCGAGCTGAAGGAGAGCATTAACAGCTTCCAGGGTGTGTTGGATGGTAAATACGATGACCTGCCAGAGCAGTCATTTTACATGGTTGGAGGTATTGAAGAGGTCATTGCAAAGGCAGAGAAGATTGCTAAGGAATCAGCATCTTAG 1608 0.5075 MASRRIVSSLIRSSLRRGSQSNPSIAASASRLASRSRSGASPAGYIFNRVAEYATSAAAAAAPSPPPPAKKESGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVLDHSSRLVLEVAQHLGEGVVRTIAMDGTEGVVRGWRVLNTGSPITVPVGRATLGRIINVIGEPIDERGDLTTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMMESGVIKLGEKQNESKCALVYGQMNEPPGARARVGLTGLTANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGEDHYETARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESINSFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242564g00001 535 PANTHER ATP SYNTHASE 73 319 - -
Stsc242564g00001 535 FunFam ATP synthase subunit beta 78 160 - -
Stsc242564g00001 535 ProSitePatterns ATP synthase alpha and beta subunits signature. 402 411 IPR020003 GO:0005524
Stsc242564g00001 535 Gene3D - 78 160 - -
Stsc242564g00001 535 Pfam ATP synthase F1 beta subunit 1 49 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Stsc242564g00001 535 CDD F1-ATPase_beta_CD 162 416 - -
Stsc242564g00001 535 MobiDBLite consensus disorder prediction 13 41 - -
Stsc242564g00001 535 FunFam ATP synthase subunit beta 414 533 - -
Stsc242564g00001 535 Pfam ATP synthase alpha/beta family, beta-barrel domain 92 158 IPR004100 GO:0046034|GO:1902600
Stsc242564g00001 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 417 IPR027417 -
Stsc242564g00001 535 Gene3D - 414 535 IPR024034 -
Stsc242564g00001 535 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 86 160 IPR036121 GO:0046034|GO:1902600
Stsc242564g00001 535 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 414 530 - -
Stsc242564g00001 535 MobiDBLite consensus disorder prediction 58 81 - -
Stsc242564g00001 535 Gene3D - 321 413 IPR027417 -
Stsc242564g00001 535 CDD ATP-synt_F1_beta_N 88 161 - -
Stsc242564g00001 535 Gene3D ATP synthase, F1 beta subunit 1 53 IPR042079 -
Stsc242564g00001 535 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 320 411 IPR000194 GO:0005524
Stsc242564g00001 535 Gene3D - 161 320 IPR027417 -
Stsc242564g00001 535 CDD ATP-synt_F1_beta_C 418 525 - -
Stsc242564g00001 535 PIRSF ATPase_subunit_beta 6 320 - -
Stsc242564g00001 535 PIRSF ATPase_subunit_beta 319 535 - -
Stsc242564g00001 535 MobiDBLite consensus disorder prediction 13 37 - -
Stsc242564g00001 535 Hamap ATP synthase subunit beta [atpB]. 87 529 IPR005722 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242564g00001 Stsc-Chr242564 8246 11709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242564g00001 125 472 Primary Pumps ATPases(2) AT1G20260 27.431 1.20e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242564g00001 K02133 - gmx:100789705 869.381