Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242559g00003 ATGTCCACCACCTTCTCTCTCCTCCTCTTCCTCCTCCTCTTTACCGCTCCCCATCTCCGAGCAGAAACCGACCCCAACGACGTCACCATCCTCCACCAGTTCCGAAAAGGACTTGACGACCCTAAGCTCCTTCCATGGCCCCAAGATGGCGGCGACCCATGCGGCACCCCTCGCTGGGACTACATCTTCTGCGACGGAAACAGAGTTGCTCAGATTCAAGCCAAGAATCTCAACCTCTCGGGTCCCTTGCCCACCAACTTCAACCAACTCACCGCCCTCACCAACGTTGGCCTCCAGAATAACCGTCTCAACGGTCCTCTTCCCTCTTTCAAGGGTTTGAAGAACCTCAAGTACTTGTTCTTGGACTACAACAACTTCGATTCTCTACCCTCCGATTGCTTCGACGGTCTCGATAGCTTGGAGGTTCTTGCGTTGGATCACAACAACCTCAATGCCTCTAATGGCGGCTGGACTCTCCCGCCGTCTCTTCAGGGTTCCACTCAGTTGACCAATTTCTCTTGTATGAGTTGCAATCTGGTGGGTTCCTTGCCGGATTTTCTGGGGAAGATGGACTCTCTCTCGTTCCTGAAACTTTCCGGCAACAATTTGACCGGAGAGTTGCCGGGGACGCTAAATGGCACCGTGTTGCAGGTTCTGTGGCTGAACAACCAGCAGGGTGAGGGGCTTACTGGGACAATTGATGTGGTTGCCACCATGGTTTCGCTCACAAGTGTGTGGCTTCATGGAAACAAATTCAGTGGGTCGATTCCGGAGAATATTGGGGATTTGGATTCGTTGAAGGATCTTAATCTCAATGGGAACCAGCTAGTTGGGCTTGTACCTGATGCATTAGGTAACATGAAATTGGACTCTCTTAATTTGAACAACAACCATTTCATGGGTCCTATCCCTGATTTCAAAGCTGTTAATGTTACTTTTGATAACAATGATTTTTGTCAACCAAAGCCTGGGATTCCATGTGCCTTTGAGGTCATGGCACTCCTGCAATTTCTTGGTGGGTTGAGTTATCCTTCTAATCTGCTGGATTCTTGGACTGGTAATGACCCTTGTTCGGGTCCGTGGTTGGGAATCAAGTGTAATACTAACGGCAAGGTTTCTATGATTAATTTGCCGAATTTTAAGCTTAATGGGACCTTGAGTCCTTCTATTGCAAATTTGGGTTCTCTTACTGAAATTAGGTTGAATGGTAACAATATTGGTGATGTGGTGCCTAGTAATTGGACTAACTTGTCTTCTCTTTCGTTGTTGGATCTGAGTGGCAATAACATTGCCGGTCCGATGCCCAAGTTCCGCACCGGAGTGAAACTTGTGACTGATGGGAACCCTCTCTTGGATCCACACTCCCGAGCTCCTTCATCTGGGAACAATAATCCATCGTCTGGATCTGGGAATGATGAGCCTTCATCAGGGTCTACACCTGCACACTCAAATAACAGTCCGAGCAGTTCTAACGAAGAAAAGAAATCCAAAGGCAAAGTGTTGGTTACGATTGTTGCCCCCATTGCTGGTGTGGCGGTTGCAGCTTTTCTGCTCATTCCAATCTATGTGTATTGTTTCAGGAGAAGAAGAAAGGATGCTTTATTGGCTCCAAGTTCATTGGTGATTCACCCAAGAGATCCATCTGATTCGGACCGTATTGTAAAGATTGCTGTTGCTAATAATACCAATGGAAGCCTTTCGACTCTAACAGGGAGTGGGTCTGGGAGTCGAAACAGCAGTGGGATTGGGGAGTCTCATGTCATTGAAGCTGGCAATCTTGTGATATCTGTTCAAGTTCTACGAAATGTGACCAAGAATTTTGCCTCTGAGAATGAGCTTGGTCGTGGTGGGTTTGGTGTTGTTTATAAGGGAGAATTGGATGATGGCACTAAAATTGCGGTGAAGCGAATGGAAGCTGGTGTTATTAGTAACAAAGCCTTGGATGAATTCCAGGCTGAAATTGCAGTTCTATCAAAAGTTAGACACCGACATCTAGTGTCTCTTTTGGGTTATTCCATTGAAGGCAATGAGAGAATTCTAGTTTATGAGTATATGCCTCAAGGTGCACTAAGTAAGNNNNNNNNNNTCTCTTGGAAGAGGAGGCTCAATATTGCCCTGGATGTTGCTAGAGGACTGGAGTACCTTCATTGTATGGCCCACCAAAGCTTCATTCACAGAGATCTTAAGTCATCCAACATCTTGCTTGCTGATGATTTCAGAGCAAAAATCTCAGATTTTGGATTGGTAAAACTTGCTCCTGAAGGTGAAAAGTCTGTAGTGACCCGGCTTGCTGGGACTTTCGGATACTTGGCGCCAGAATATGCAGTGACTGGAAAAATCACTACCAAAGCCGATGTTTTCAGCTTTGGGGTTGTGCTAATGGAGCTGTTGACAGGATTGATGGCACTTGATGACGGTAGACCTGAGGAAAGCCAATACTTGGCAGCATGGTTCTGGCATATAAAATCAGACAAGAAGAAACTAAGGGCTGCCATCGATCAATCCCTTGACATAAAAGATGAAACATTCGAGACCATCTCCGTCATTGCTGAGTTAGCTGGACACTGCACTGCCAGAGAACCAAGCCAACGACCGGATATGGGTCATGCCGTGAATGTTCTGGCACCACTCGTTGAAAAATGGAAACCATTTGATGACGACACAGAGGAGTATTCCGGCATCGATTACAGTCTTCCTCTTAACCAGATGGTGAAGGACTGGCAGGAGGCAGAAGGAAAGGACTTGAGTTATATGGACTTGGAAGACAGCAAGAGTAGTATCCCTGCAAGGCCCACTGGATTTGCAGATTCTTTTACTTCGGCTGATGGCAGGTGA 2835 0.4656 MSTTFSLLLFLLLFTAPHLRAETDPNDVTILHQFRKGLDDPKLLPWPQDGGDPCGTPRWDYIFCDGNRVAQIQAKNLNLSGPLPTNFNQLTALTNVGLQNNRLNGPLPSFKGLKNLKYLFLDYNNFDSLPSDCFDGLDSLEVLALDHNNLNASNGGWTLPPSLQGSTQLTNFSCMSCNLVGSLPDFLGKMDSLSFLKLSGNNLTGELPGTLNGTVLQVLWLNNQQGEGLTGTIDVVATMVSLTSVWLHGNKFSGSIPENIGDLDSLKDLNLNGNQLVGLVPDALGNMKLDSLNLNNNHFMGPIPDFKAVNVTFDNNDFCQPKPGIPCAFEVMALLQFLGGLSYPSNLLDSWTGNDPCSGPWLGIKCNTNGKVSMINLPNFKLNGTLSPSIANLGSLTEIRLNGNNIGDVVPSNWTNLSSLSLLDLSGNNIAGPMPKFRTGVKLVTDGNPLLDPHSRAPSSGNNNPSSGSGNDEPSSGSTPAHSNNSPSSSNEEKKSKGKVLVTIVAPIAGVAVAAFLLIPIYVYCFRRRRKDALLAPSSLVIHPRDPSDSDRIVKIAVANNTNGSLSTLTGSGSGSRNSSGIGESHVIEAGNLVISVQVLRNVTKNFASENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISNKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMPQGALSKXXXXSWKRRLNIALDVARGLEYLHCMAHQSFIHRDLKSSNILLADDFRAKISDFGLVKLAPEGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDDGRPEESQYLAAWFWHIKSDKKKLRAAIDQSLDIKDETFETISVIAELAGHCTAREPSQRPDMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKDWQEAEGKDLSYMDLEDSKSSIPARPTGFADSFTSADGR 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242559g00003 944 Pfam Leucine rich repeat N-terminal domain 331 367 IPR013210 -
Stsc242559g00003 944 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Stsc242559g00003 944 Gene3D Phosphorylase Kinase; domain 1 572 684 - -
Stsc242559g00003 944 MobiDBLite consensus disorder prediction 918 944 - -
Stsc242559g00003 944 Gene3D Transferase(Phosphotransferase) domain 1 685 894 - -
Stsc242559g00003 944 Gene3D Ribonuclease Inhibitor 329 453 IPR032675 -
Stsc242559g00003 944 MobiDBLite consensus disorder prediction 441 494 - -
Stsc242559g00003 944 SMART serkin_6 607 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242559g00003 944 FunFam PTI1-like tyrosine-protein kinase 3 687 888 - -
Stsc242559g00003 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Stsc242559g00003 944 SMART LRR_typ_2 137 165 IPR003591 -
Stsc242559g00003 944 SMART LRR_typ_2 190 213 IPR003591 -
Stsc242559g00003 944 SMART LRR_typ_2 263 286 IPR003591 -
Stsc242559g00003 944 SMART LRR_typ_2 113 136 IPR003591 -
Stsc242559g00003 944 SMART LRR_typ_2 417 439 IPR003591 -
Stsc242559g00003 944 SMART LRR_typ_2 393 416 IPR003591 -
Stsc242559g00003 944 PANTHER OSJNBA0070M12.3 PROTEIN 7 944 - -
Stsc242559g00003 944 SUPERFAMILY L domain-like 23 307 - -
Stsc242559g00003 944 MobiDBLite consensus disorder prediction 455 491 - -
Stsc242559g00003 944 FunFam Receptor-like kinase TMK4 25 324 - -
Stsc242559g00003 944 Pfam Leucine rich repeat 241 299 IPR001611 GO:0005515
Stsc242559g00003 944 Pfam Leucine rich repeat 92 150 IPR001611 GO:0005515
Stsc242559g00003 944 SUPERFAMILY L domain-like 330 437 - -
Stsc242559g00003 944 FunFam receptor protein kinase TMK1 569 684 - -
Stsc242559g00003 944 ProSitePatterns Protein kinases ATP-binding region signature. 613 635 IPR017441 GO:0005524
Stsc242559g00003 944 Gene3D Ribonuclease Inhibitor 24 325 IPR032675 -
Stsc242559g00003 944 SUPERFAMILY Protein kinase-like (PK-like) 583 874 IPR011009 -
Stsc242559g00003 944 ProSiteProfiles Protein kinase domain profile. 607 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242559g00003 944 Pfam Protein kinase domain 609 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242559g00003 944 CDD STKc_IRAK 613 877 - -
Stsc242559g00003 944 FunFam Leucine-rich repeat receptor-like kinase 329 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242559g00003 Stsc-Chr242559 12478 16134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242559g00003 79 911 Receptor kinase-like Gene Family AT1G55610 29.674 6.22e-80 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc242559g00003 Pkinase 7.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242559g00003 K00924 - gmx:100305366 1385.16