Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242557g00004 ATGCCACCATACTACAACTCGGCTGTGCCTAATGGTCATGCTCCTCATCCATACATGTGGGGACCACCACAGCCAATGATGCCCCCTTATGGGCCGCCTTATGCGGCACTCTATTCGCATGGAGGGGTTTATGCTCACCCTGCAGTTGCTATTGGGCCTCATGGACCTGGTCAGGGAGTTCCGACTTCACCTGCTGCTGGGACCCCTTCAAGTGTAGAAACACCAACCAAATTATCTGGAAATACTGATCAGGGTTTAATGAAAAAATTGAAAGGATTTGATGGGCTGGCAATGTCAATAGGCAATGGCAATGCTGAAAGTGCAGAGCGTGGAGCTGAAAACAGGCTATCACAGAGTGTGGACACTGAAGGTTCCAGTGATGGAGGTGATGGCAACACTGCAGGGACTAATCAAACGAGGAAAAGAAGTCGTGATGGAACACCAACTACTGATGGGGAAGGGAAAACTGAGATTCAAGACAGTCCAACCCCCAAAGAGAATGCAGCCAATAAGACAATTGCAACTGCCCCAATCAATATTGCAGGAACTTTAGCTGCACCTGTTGGTTCTTCAGGTATGACCACAGCACTGGAGTTGATGAACCCTGCAACTCTGCACCCTAGGACAAATTCCCCAAATGGCCCACAACCTTGTGGAGTTATGCCTTCTGAAGCTTGGATACAGAATGAGCGTGAGCTGAAACGTGAGAGGAGGAAACAATCAAACCGTGAATCTGCAAGAAGGTCCAGGCTAAGGAAGCAGGCTGAGGCTGAAGAATTGGCACGAAAAGTCGAAAACTTGACTGCTGAGAATGTGTCGTTGAAATCAGAAATAAATCAATTGAGTGAAAGTTCTGAGAAACTTAGGGTGGAGAATACTACATTAAGGGAAAAACTGAAAAATGCTCAACTGGGACAAGCAGATGAGATAGTTTTGAACAACACTGACAGCAACAGGGCTACCCCTGTGAGTACAGAAAACTTACTATCAAGAGTTAACAATAATTCCAGTTCTGATGATAGAGCTGCTGAGGAAACTGATTTTTGTGAGAACAAATCAAACTCGNNNNNNNNNNTCCTAGAGCTGATGCTGTTGCAGCTGGTTGAGACCAATGATTGTTCTGGCTTTAGTTTTGGCATATTACAAGCCCAAAATTACTGCTGA 1164 0.4545 MPPYYNSAVPNGHAPHPYMWGPPQPMMPPYGPPYAALYSHGGVYAHPAVAIGPHGPGQGVPTSPAAGTPSSVETPTKLSGNTDQGLMKKLKGFDGLAMSIGNGNAESAERGAENRLSQSVDTEGSSDGGDGNTAGTNQTRKRSRDGTPTTDGEGKTEIQDSPTPKENAANKTIATAPINIAGTLAAPVGSSGMTTALELMNPATLHPRTNSPNGPQPCGVMPSEAWIQNERELKRERRKQSNRESARRSRLRKQAEAEELARKVENLTAENVSLKSEINQLSESSEKLRVENTTLREKLKNAQLGQADEIVLNNTDSNRATPVSTENLLSRVNNNSSSDDRAAEETDFCENKSNSXXXXLELMLLQLVETNDCSGFSFGILQAQNYC 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242557g00004 387 MobiDBLite consensus disorder prediction 111 143 - -
Stsc242557g00004 387 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 237 252 IPR004827 GO:0003700|GO:0006355
Stsc242557g00004 387 MobiDBLite consensus disorder prediction 152 172 - -
Stsc242557g00004 387 MobiDBLite consensus disorder prediction 199 223 - -
Stsc242557g00004 387 SMART brlzneu 230 294 IPR004827 GO:0003700|GO:0006355
Stsc242557g00004 387 Coils Coil 243 298 - -
Stsc242557g00004 387 MobiDBLite consensus disorder prediction 63 83 - -
Stsc242557g00004 387 Pfam bZIP transcription factor 230 292 IPR004827 GO:0003700|GO:0006355
Stsc242557g00004 387 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 232 295 IPR004827 GO:0003700|GO:0006355
Stsc242557g00004 387 MobiDBLite consensus disorder prediction 199 217 - -
Stsc242557g00004 387 Pfam G-box binding protein MFMR 1 49 IPR012900 -
Stsc242557g00004 387 Pfam Disordered region downstream of MFMR 83 208 - -
Stsc242557g00004 387 CDD bZIP_plant_GBF1 235 283 IPR045314 GO:0003700|GO:0006355
Stsc242557g00004 387 Gene3D - 233 287 - -
Stsc242557g00004 387 MobiDBLite consensus disorder prediction 46 172 - -
Stsc242557g00004 387 FunFam G-box binding factor 3 233 288 - -
Stsc242557g00004 387 SUPERFAMILY Leucine zipper domain 233 289 IPR046347 GO:0003700|GO:0006355
Stsc242557g00004 387 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 340 IPR044827 GO:0003700|GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242557g00004 1 363 bZIP Transcription Factor Family AT2G46270 46.196 2.52e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc242557g00004 MFMR_assoc 3.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242557g00004 K09060 - gmx:778133 484.182