Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242551g00003 ATGGGTTTGCTTCCATTTTCTATAGTTCTGTTTATTGCTTTGTCTATTTCTTATGTTGGGGTTCATGGGAAGGAAAACTTGCCCTTAGTGACTGAGAAAGCCTCACTTGTTTCATTCATGTCCAGCATTGTTTCTGACCCCAAAAACATTCTAGAAACTTGGAATTCACCACATGTTCATGTTTGTAATTGGACCGGTGTCCGATGCAACAATGCAAGTGATAGGATCATAGAGCTTGATCTTAGTGGAATGTCACTTGGTGGCACCATTTCCCCTTCTCTTTCTAACTTATCTTCCTTGCAAATTCTTGATCTTTCACAAAACTTCTTTATCGGTTGCATTCCAAAAGAGCTTGGGAATTTGATTCAGCTTCGCCAACTCAGCTTGTTCTCGAATCTCCTCGGAGGGGAAGTTCCCTCCAAGTTGGGTTCCTTTAACAACTTGTACTACCTAGACCTCGGAAGTAATCGCCTCGAGGGTGACATTCCATCATCACTTTTCTGCAATATTTCTTCTTCACTAAGGTACATAGACCTCTCAAACAATTCATTTGGGGGACAAATACCCCTCAACAATGAATGTGTCCTCAAAGAGATTAGGTTCCTCTTACTCTGGTCTAACAAGCTTGTAGGTCAAGTTCCTTTAGCTCTTTCAAACTCCACAGAGCTTAAATGGCTTGATCTAGAGTCAAATTTCTTGAGTGGGGAGCTACCCTCTCAGATTGTTCCTCATTGGTCCCAATTACAATTCCTCTACCTATCATATAATAGCTTTGTTAGCCATGACAATAACCTCAACCTTGAACCTTTCTTTGATTCCTTAAAGAATTTGTCCCGCTTTCAAGTACTCGAGTTGGCCGGAAACAAGCTCGGAGGGAAACTTCCTCACACAATTGGTAATCTTCCTGCTAGCATGTCACAGCTTCATCTAGATGCCAATCACATATATGGATCCATACCTCCTAGCATTGCAAACCTAGTTAATTTGACTCTATTAAACTTCTCCAGTAACCAAATAAATGGTTTAATACCTCCCAGCCTCTGCCAAATGCAGAGGTTGGAGAGAATTTATCTATCAAACAATCTATTGTCCGGCGAGATTCCTTCAACCATTGGTGGCATTCAGCACCTTGGGCTTGTAGACTTGTCTAGAAACAAGCTTTCTGGTTTGATACCAGACAGTTTCGCGAACCTCACCCAGTTAAGAAGGCTTTTACTTCATGGAAACCAACTTTCTGGAACAATACCACTGAGTTTGGGAAAATGCATCAATTTGGAGATTTTAGACCTTTCTCACAACAAGATTTCAGGGCAGATACCTGCAGAAGTTGCAGCCTTAAGTAGCTTGAAGCTTTACTTAAATTTATCAAGCAATGAGTTACAAGGGCCTTTACCCCTAGAACTTTCCAAAATGGAGATGGTCCTTGCAATTGATCTATCCATGAACAATCTATCCGGGAGAATCCCGCCGCAACTCGAGAGTTGCATAGCCCTAGAGTACCTTAACCTTTCTAGCAACTCCTTAGAAGGTCCTCTTCCATCTTTATTTGCCCAATTGCCTTATATTCGAGCACTTGACGTGTCCTCAAATCAACTGACCGGAGTAATACCACAGTCCATTCAGTTGTCTTCCTCTCTCAAGACACTTAACTTCTCTTTCAATAAATTCTCAGGGAGTGTCTCAAACAAGGGAGCATTTTCATATTTAACCAAATACTCACTCCTAGGAAATGATCATCTATGTGGCAGCATACCAGGCATACAAAGTTGCCACAAGAAATACGGTTATCATTTGGTTCTTTTATTGATTCCTATGATTCTTTTCAGCATCCCTCTGCTTTGCTTGTTCCGCAAGCAACTGGAAAAAGTTGGCAAAGGGGACTTGGAGGATGAAGATGAGGAAACAAAGGATGTCAAGTATGCAAGAATTTCATACAGACAACTTGTTGAAGCCACCGGAGGCTTCAGCGCTGCAAGTCTAATAGGTTCAGGTCGGTTCGGACAGGTCTACAAAGGAGTGCTTTGTGATAACACAAAAATAGCTGTGAAGATATTAAATACAGCCACAGCTGGTGACATTACTGGGAGCTTTAGAAGGGAATGCAAAATCCTGAAAAGGACTAAGCATAGGAACCTAATAAGGATAATCACAATTTGCAGTAAAAAGGAGTTTAAGGCTCTTGTCCTTCCACTGATGCCAAATGGCAGCCTAGAGAGGCACCTATATCCGAGCCACGGGCAAAGCCGGAGAGATATGGTTCAGTTGGTGAAGATTTGCAGCGATGTGGCTGAGGGAATGGCCTATCTGCACCATTACTCACCAGTTAGAGTTGTGCACTGTGATCTTAAGCCGAGCAACATACTACTTGATTATGATTTTACAGCTCTGGTGACTGATTTTGGAATTTCAAGACTTGTTAAATGTGATGAGAGTATGTTCGCTGGTGATTCTGCATCTTTCAGTTCAACACATGGCTTGTTATGTGGCTCTCTTGGTTACATAGCCCCTGAATACGGAATGGGGAAGCATGCGTCAACTGAGGGCGATGTATACAGCTTCGGAGTAATGATGCTGGAAATAGTGACAGGCCGACGCCCAACTGATGTCCTTATCCATGAAGGTTCCAGCTTGCATGATTTTGTTAAGAGGCAATATCCACACAAGCTTCACCATTTTGTTGACCAAGCAATAATAATGCAGAGATGCTCTTCTTATTCTGGCATTATTTCAATTCAGCATCATCACAAAGTTGTGCAAGAAATTGTGCTTGAGTTCATAGAGTTGGGGCTTCTTTGCACACAACAGAATCCTGCTACGAGACCAAGCATGATGGATGTTGCCCAAGAAATGGGGAGGTTGAAGGACTATGTTTCTTGTCCTTCTTCTTCTCCTCTGCCTGCTGATGAAGTCAACGTTAAGGTTAATTCCTTCTGCTGCGAAGATAGCTTGGTTTGA 2955 0.4223 MGLLPFSIVLFIALSISYVGVHGKENLPLVTEKASLVSFMSSIVSDPKNILETWNSPHVHVCNWTGVRCNNASDRIIELDLSGMSLGGTISPSLSNLSSLQILDLSQNFFIGCIPKELGNLIQLRQLSLFSNLLGGEVPSKLGSFNNLYYLDLGSNRLEGDIPSSLFCNISSSLRYIDLSNNSFGGQIPLNNECVLKEIRFLLLWSNKLVGQVPLALSNSTELKWLDLESNFLSGELPSQIVPHWSQLQFLYLSYNSFVSHDNNLNLEPFFDSLKNLSRFQVLELAGNKLGGKLPHTIGNLPASMSQLHLDANHIYGSIPPSIANLVNLTLLNFSSNQINGLIPPSLCQMQRLERIYLSNNLLSGEIPSTIGGIQHLGLVDLSRNKLSGLIPDSFANLTQLRRLLLHGNQLSGTIPLSLGKCINLEILDLSHNKISGQIPAEVAALSSLKLYLNLSSNELQGPLPLELSKMEMVLAIDLSMNNLSGRIPPQLESCIALEYLNLSSNSLEGPLPSLFAQLPYIRALDVSSNQLTGVIPQSIQLSSSLKTLNFSFNKFSGSVSNKGAFSYLTKYSLLGNDHLCGSIPGIQSCHKKYGYHLVLLLIPMILFSIPLLCLFRKQLEKVGKGDLEDEDEETKDVKYARISYRQLVEATGGFSAASLIGSGRFGQVYKGVLCDNTKIAVKILNTATAGDITGSFRRECKILKRTKHRNLIRIITICSKKEFKALVLPLMPNGSLERHLYPSHGQSRRDMVQLVKICSDVAEGMAYLHHYSPVRVVHCDLKPSNILLDYDFTALVTDFGISRLVKCDESMFAGDSASFSSTHGLLCGSLGYIAPEYGMGKHASTEGDVYSFGVMMLEIVTGRRPTDVLIHEGSSLHDFVKRQYPHKLHHFVDQAIIMQRCSSYSGIISIQHHHKVVQEIVLEFIELGLLCTQQNPATRPSMMDVAQEMGRLKDYVSCPSSSPLPADEVNVKVNSFCCEDSLV 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242551g00003 984 ProSiteProfiles Protein kinase domain profile. 655 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242551g00003 984 SUPERFAMILY Protein kinase-like (PK-like) 638 948 IPR011009 -
Stsc242551g00003 984 Gene3D Transferase(Phosphotransferase) domain 1 732 961 - -
Stsc242551g00003 984 Pfam Leucine rich repeat 352 411 IPR001611 GO:0005515
Stsc242551g00003 984 Pfam Leucine rich repeat 498 556 IPR001611 GO:0005515
Stsc242551g00003 984 Pfam Leucine Rich repeat 421 437 IPR001611 GO:0005515
Stsc242551g00003 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Stsc242551g00003 984 SUPERFAMILY L domain-like 272 574 - -
Stsc242551g00003 984 Gene3D Ribonuclease Inhibitor 30 193 IPR032675 -
Stsc242551g00003 984 Gene3D Ribonuclease Inhibitor 264 367 IPR032675 -
Stsc242551g00003 984 Gene3D Ribonuclease Inhibitor 472 583 IPR032675 -
Stsc242551g00003 984 ProSiteProfiles Leucine-rich repeat profile. 424 446 IPR001611 GO:0005515
Stsc242551g00003 984 Pfam Protein kinase domain 658 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242551g00003 984 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Stsc242551g00003 984 Gene3D Phosphorylase Kinase; domain 1 620 730 - -
Stsc242551g00003 984 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 194 - -
Stsc242551g00003 984 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 271 362 - -
Stsc242551g00003 984 Gene3D Ribonuclease Inhibitor 194 263 IPR032675 -
Stsc242551g00003 984 Gene3D Ribonuclease Inhibitor 368 471 IPR032675 -
Stsc242551g00003 984 PANTHER RECEPTOR-LIKE PROTEIN 55 306 951 - -
Stsc242551g00003 984 ProSitePatterns Protein kinases ATP-binding region signature. 661 683 IPR017441 GO:0005524
Stsc242551g00003 984 ProSiteProfiles Leucine-rich repeat profile. 147 169 IPR001611 GO:0005515
Stsc242551g00003 984 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 363 594 - -
Stsc242551g00003 984 CDD STKc_IRAK 661 953 - -
Stsc242551g00003 984 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 732 962 - -
Stsc242551g00003 984 SMART LRR_typ_2 398 422 IPR003591 -
Stsc242551g00003 984 SMART LRR_typ_2 423 446 IPR003591 -
Stsc242551g00003 984 SMART LRR_typ_2 326 350 IPR003591 -
Stsc242551g00003 984 SMART LRR_typ_2 519 542 IPR003591 -
Stsc242551g00003 984 SMART LRR_typ_2 145 169 IPR003591 -
Stsc242551g00003 984 SMART LRR_typ_2 374 397 IPR003591 -
Stsc242551g00003 984 SMART LRR_typ_2 97 121 IPR003591 -
Stsc242551g00003 984 SMART serkin_6 655 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242551g00003 984 SUPERFAMILY L domain-like 32 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242551g00003 Stsc-Chr242551 14958 18893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242551g00003 31 955 Receptor kinase-like Gene Family AT3G47110 34.375 7.23e-164 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc242551g00003 Pkinase 6.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242551g00003 - - gmx:100792446 1319.29