Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242550g00004 ATGGGAAGGCCAGTTGAGGCAGCAAGAAATCATGTTAATAATAGTGATCATTATCCTAAATCAAGATTGGATCTTAATTTCTTGGATGAGAGGCTGTTTAAATCTGCAATGAAGTATTCAAGAATGGGGTACCTTGATCCTTGTTACGTTACTCCTGATAATTTGAGCACTAAAAATGATGTCTTTAGTTTTGCGATTTTGTTGTTTGAGATTATTAGTGGAAGGAAAGCCATTAATGTAACATATTCGCCACCTTCTATTGTAGATTGGGCTATTCCATTGATAAAGAAAGAGAAGCTTTTGAGTGTTTATGATCCAAGGATTGCTCCTCCTAAGGATCCTGTTGTGAGGAAGCAATTGGCTTTGATTGCAGCAAAGTGTGTGCGGAATTGCAGGGAGAAAAGGCCTTCAATGAGTGAGAATGTGAATTGGCTCAAGCAAGGAGAGCTTTCCCCTCTTCTCCTATCATCAGAAGTCTCTTCCACCCGCCACCAACCCTTTGGGCGGAGACCTTTCTGA 519 0.4066 MGRPVEAARNHVNNSDHYPKSRLDLNFLDERLFKSAMKYSRMGYLDPCYVTPDNLSTKNDVFSFAILLFEIISGRKAINVTYSPPSIVDWAIPLIKKEKLLSVYDPRIAPPKDPVVRKQLALIAAKCVRNCREKRPSMSENVNWLKQGELSPLLLSSEVSSTRHQPFGRRPF 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242550g00004 172 Gene3D Transferase(Phosphotransferase) domain 1 14 152 - -
Stsc242550g00004 172 PANTHER OS01G0253100 PROTEIN 40 147 - -
Stsc242550g00004 172 SUPERFAMILY Protein kinase-like (PK-like) 42 158 IPR011009 -
Stsc242550g00004 172 Pfam Protein tyrosine and serine/threonine kinase 40 142 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242550g00004 Stsc-Chr242550 14083 14601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242550g00004 42 147 Receptor kinase-like Gene Family AT3G59420 43.396 2.19e-23 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc242550g00004 PK_Tyr_Ser-Thr 1.7e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242550g00004 - - vum:124832395 192.971