Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242548g00001 ATGGACTTAACCCCAACTGATGCAACCACCACCCAAACCCAAACCTTACACACGAACTCACAAACCCCACCACCACCACCAACAACAAACGGTTCCCTCAAACCCCACAACCCCCTCCCGGCCACCGCTGTCGCCGCCGCACCACCACCACCACCACCACTCTCCATGGTAATTTCCTACAAAGAGTGCCTCAAGAATCATGCAGCCACCATCGGAGGCCACGCCCTCGACGGCTGCGGTGAGTTCATGCCCTCCTCCTCCTCCAACCCCTCGGAGCCACGCTCCCTCACGTGCGCCGCATGTGGCTGCCACCGCAACTTCCACCGCCGCGACCAAGAATCCCTCCAGCACCACCACCACCACCACAACCACCCAAGCTTCCTCAGCTTCTATCCCCAGCGTGGACTCAGCCTTAGCACAAGCCCAAGCACCACAAGCCCAAGCCCAAGCCCATCAGGAAGCCCAATTTCAAGCCCGTCATCACCACCACCGCCCGCACCCGCCCCTCTCTCTCACCACTTCCCTCCTCCTCCTCCTCCTCCTCCTTACTCCTCCTTCCACCACCACAACATGAATTCTCCGGCCACCGCTGCTCCCACGAGCATGCTCTTATCCCTTGGAAATGCGGCGTGTTCTTCCGGTGGTGGTGGATTCAATAATCACCAGCATAATCAAGACTTGAATAGCTCGAAGAAGAGGCATAGGACGAAGTTCAGCAAGGAGCAGAAGGAGAAGATGCTGAGATTCTCGGAGAAGATTGGTTGGAGAATGCAGAGAGATGAAGATGGTTTGATTCAAGATTTTTGCAACCAAATTGGGGTTTCTAGAGGGGTCTTCAAGGTTTGGATGCACAACAACAAGAACACCTTCTTCATCAGAAACAGGAACAACAACAACAACAACAACAACGATGCTTCTAATTCCGCTGCACAAAAGAATGTGGAAATGGGAATGGTAATCAACACAGCAACAACACTAGTAGCAGCAACGATGACATTCACAGAGATTAATTGA 1014 0.5355 MDLTPTDATTTQTQTLHTNSQTPPPPPTTNGSLKPHNPLPATAVAAAPPPPPPLSMVISYKECLKNHAATIGGHALDGCGEFMPSSSSNPSEPRSLTCAACGCHRNFHRRDQESLQHHHHHHNHPSFLSFYPQRGLSLSTSPSTTSPSPSPSGSPISSPSSPPPPAPAPLSHHFPPPPPPPPYSSFHHHNMNSPATAAPTSMLLSLGNAACSSGGGGFNNHQHNQDLNSSKKRHRTKFSKEQKEKMLRFSEKIGWRMQRDEDGLIQDFCNQIGVSRGVFKVWMHNNKNTFFIRNRNNNNNNNNDASNSAAQKNVEMGMVINTATTLVAATMTFTEIN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242548g00001 337 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 111 IPR006456 -
Stsc242548g00001 337 Gene3D - 216 290 - -
Stsc242548g00001 337 SUPERFAMILY Homeodomain-like 222 289 IPR009057 -
Stsc242548g00001 337 MobiDBLite consensus disorder prediction 148 185 - -
Stsc242548g00001 337 MobiDBLite consensus disorder prediction 114 194 - -
Stsc242548g00001 337 MobiDBLite consensus disorder prediction 130 147 - -
Stsc242548g00001 337 Pfam ZF-HD protein dimerisation region 58 112 IPR006456 -
Stsc242548g00001 337 FunFam Zinc-finger homeodomain protein 2 218 291 - -
Stsc242548g00001 337 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
Stsc242548g00001 337 NCBIfam homeobox domain, ZF-HD class 231 288 IPR006455 -
Stsc242548g00001 337 MobiDBLite consensus disorder prediction 1 19 - -
Stsc242548g00001 337 MobiDBLite consensus disorder prediction 1 48 - -
Stsc242548g00001 337 MobiDBLite consensus disorder prediction 215 243 - -
Stsc242548g00001 337 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 32 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242548g00001 Stsc-Chr242548 11855 13011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242548g00001 56 314 ZF-HD Transcription Factor Family AT2G02540 37.011 1.39e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc242548g00001 ZF-HD_dimer 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242548g00001 - - aip:107641865 331.257