Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242544g00002 ATGGAAGAGGAAATCAAGTCAGAATTCAGAAAAGCCGGCTTCAACCTTGACGACGAAGAAGAAATACTCAACAAGTGTATGGCTTTCTGCATCAACTACAGCCTCAGCCCTACAGATCTCGTTTCAAACTGGGAGGTTTATTACCTTAACAGGGTCTTAAATAATGACGATGATGCTAAGTTTACTGCTCCTGGGACTCCGACAAATCATCATGAAGATCTTCATTCACCTGCCCGCGAAGCAATGTCTCTAACAAATGGGAATATTTTATCTTCTGGAAAACCAACTGAGCTAGTGACACCATTTTCAAAGCGAACTGATAGGTTCGCCGTGAAATTTAGCATCAACACAGTGCCTGATACAGAGAATGAAAAACAAGCCCCGGATCATGAGAGTGATGAAGATGATGTTATTAGGAAAGTTAAGCCCTGTAAAAGGTGTTCCTTGGTGATTCATGGATCAGGGCCCAAACCTGGTTGCAGATTCATGCATGATAGGACTGAGGATAGGATGAATGTAATAGAAAATCGTATTCGCAAACATACAAGGGCACTTGTTGCTTCTGGGCTTTATGGAGAACCAACAGACCCTACAATTGCTTCACAGAGAAGCATTTTTGCTGTCGGCATGATTTGCTGCGATGCAGAAGGCCGTCTAAATGACAAGTCTGTCATGCTGCAGGGCAGTGTGGAGCATTCTGGAGGGGAATGTGTTCGTCTAGACTTGCAACGCTTAAGCCATTTTTCAATTTTTCCGGGTCAGGTAGTTGGTATTGAAGGGCACAATCCTAGTGGGCATTGCTTAGTTGCATCTAAATTGGTAGATTCTATACCACCTTCCACTGTTGCTGATGATGAGGATTTGAATCCAGCAAAGAAGCTAGCTATTGATAAAAGTCAATCAATTGATATTCCTTCCAAAGATACAGAGTTGTCCGTGATTATTGCAGCAGGCCCTTTTACAACAACAGACAATTTATTTTTTGAGCCCCTTGTAGAATTGTTAGGATACGCAAAGCGAAGACAGCCACAGTTACTTATTTTGTTGGGACCATTTGTTGATTCTGAACACCCCAACATTAAGAAAGGAACTGTTGACAAGACCTTTGATGAAATATTTCATAATGACATCCTGAGCAAGTTACAAGATTATGTAGAATGTATGGGTTCTGCTGCGCGTGTTCTTCTGGTACCATCTATTCGAGATGCTAACCATGATTTTGTTTTCCCTCAGCCTGAACTGGATATTAGTCTTCCTGATCTCACACCTCAGATAATTAGTCTTACTAATCCTGGAATCTTTGAGGCAAATGAGGTCAAAGTTGGTTGCTGCAGTGTAGATATTCTCAAGCAGGTCAGTGGGGAAGAGATATCACGAACTGCGCCAGATGGACAATCTACTGATCGCTTGAGTAGGCTTGCAAACCATATTCTTAGCCAACAAAGCTTTTATCCACTTTATCCACCGGCAGAAGGTGTTCCTTTGGATTTTTCTCTTGCACCAGAAGCCCTTCAACTCCCATTGGTTCCAGATCTTCTTATATTACCTTCGGATATCAAGTACTTTGTCAAGGTGCTTAATGTGGGAAGTGAGGAGACAAAGTGCAAGAGATGCATTGCTGTGAATCCAGGAAGACTAGCAAAGGGAGAAGGAGGGGGTACTTTTGTAGAGCTTGATTATCGAGGAGGTTCCGACAAAATTAATGCATCTGTTATTGGCATATGA 1725 0.422 MEEEIKSEFRKAGFNLDDEEEILNKCMAFCINYSLSPTDLVSNWEVYYLNRVLNNDDDAKFTAPGTPTNHHEDLHSPAREAMSLTNGNILSSGKPTELVTPFSKRTDRFAVKFSINTVPDTENEKQAPDHESDEDDVIRKVKPCKRCSLVIHGSGPKPGCRFMHDRTEDRMNVIENRIRKHTRALVASGLYGEPTDPTIASQRSIFAVGMICCDAEGRLNDKSVMLQGSVEHSGGECVRLDLQRLSHFSIFPGQVVGIEGHNPSGHCLVASKLVDSIPPSTVADDEDLNPAKKLAIDKSQSIDIPSKDTELSVIIAAGPFTTTDNLFFEPLVELLGYAKRRQPQLLILLGPFVDSEHPNIKKGTVDKTFDEIFHNDILSKLQDYVECMGSAARVLLVPSIRDANHDFVFPQPELDISLPDLTPQIISLTNPGIFEANEVKVGCCSVDILKQVSGEEISRTAPDGQSTDRLSRLANHILSQQSFYPLYPPAEGVPLDFSLAPEALQLPLVPDLLILPSDIKYFVKVLNVGSEETKCKRCIAVNPGRLAKGEGGGTFVELDYRGGSDKINASVIGI 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242544g00002 574 Gene3D - 1 57 IPR043034 -
Stsc242544g00002 574 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 60 564 IPR016722 -
Stsc242544g00002 574 Coils Coil 164 184 - -
Stsc242544g00002 574 Gene3D - 465 570 - -
Stsc242544g00002 574 Gene3D - 295 458 - -
Stsc242544g00002 574 FunFam DNA polymerase alpha subunit B 294 459 - -
Stsc242544g00002 574 Pfam DNA polymerase alpha/epsilon subunit B 313 524 IPR007185 GO:0003677|GO:0006260
Stsc242544g00002 574 PIRSF DNA_pol_alpha_2 52 569 IPR016722 -
Stsc242544g00002 574 PIRSF DNA_pol_alpha_2 1 62 IPR016722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242544g00002 Stsc-Chr242544 7434 12986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242544g00002 2 574 Core DNA Replication Machinery Family AT1G67630 55.305 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242544g00002 K02321 - qsa:O6P43_030564 835.484