Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242543g00003 ATGCTACCACAAGTATTAGCTATCCCTGTAGCAATTCTCCTTGTGATATTCACATTCATCATTATTTTTCTATCACCATTTGTGTTGAATCCTGCAGCAAAACCTCAACATAACAATGGAAGTAGTAAAAAAACCCCACCGGGTCCAAAACCATTACCAATTATTGGTAACCTTCATATCTTAGGAAAATTCCCACACCGCACCCTTCAGGCCCTTGCCACTAAATATGGACCCATAATGTCTCTCAAGTTAGGACAAGTTCCAGCACTTGTGGTTTCTTCTCCGGAAGTTGCTCAGCTCTTTTTCAAAACCCATGACTCCATTTTTGCAAATCGTCCTAAGCTTCAGGTAGTGGAGACTCTTTCTTATGGTCGAAAGGGGTTGGTGTTTACAGAGTACGGTGGTTATTGGCGCAATGTGAGGAAGTTGTGTACCATGCAACTTCTAAGTGCACCCAAGATTGAGATGTTTGGTCCTTTGAGGAAGAAGGAGTTGGGATTGTTGGTGAATACACTTAAGAAGGCTTCGGATTTACATGAAGTTGTGGATCTCAGTGAATTGATTGGAGAGGTTGTTGAGAATATTACTTATAACATGATATTAGGTCGTAACAAGGATGATAGGTTTGACATCAAGGGCCTTATTCATGAGATTATGAACTTGATTGGTCTTTTCAATCTTGCGGATTTTGTGCCTATCTTAGCTTCATTTGATCTTCAGGGGCTAAAGAGAAGAGCAAAGAAAGCAAGCAAGGCCGTTGGTGAAGCATTAGATCAGATCATTAACGATCACGAACACCCTTCATCAGTTGAATCCCCAGAGTTTAAGGATTTCATAGACATATTACTCAGCTACATGAATCAACCAGTGGACCCACATGATCATGAACAAAGACACATAGTTGGGAGAACCAATATAAAGGCCATCGTATTGGATTTAATTGCTGGAGCATACGACACTTCTAGAACCACAATCGAATGGGGTATGTCAGAGCTCATAAAAAATCCAACAACAATGAACAAACTTCAAAACGAGATTGAAGCCCTTGTGGGAATACATAGACAAGTGGAAGAAAAAGACTTGGAAAAATTGCCTTATCTTGACATGGTTGTCAAGGAGATATTTCGATTATACCCTGTAGGACCATTACTTGTGCCACACGAATCCTCAGAAGATGTTACCATAAATGGTTATTTCATAGAGAAAAATACACGGATCATGGTGAATGCATGGGCCATAGGGAGAGATCCAAGAATTTGGTCAGAAAATAGTGACATGTTTTTTCCTGAAAGATTTGAAAACAATGATATAGATGTGAAGGGGCATGATTTTAGACTGATACCATTTGGGTCAGGTCGAAGAGGGTGCCCTGGGATGAATATGGGGTTAATTACCGTTAAGATTATTTTGGCACAATTAGTGCATTGTTTTAGTTGGGAACTTCCGTTGGGTATGTCTCCAATGGATTTAGATATGACTGAGGAATTTGGGCTATCTATACCAAGAACCTCCCAAGGAAACCCAAAAATGGTGAGCATATCCAATCATCCTACAGAGTCGTCACTCTTCAAAGACGCGCTCGGCAATGCCCTCTCCATCTATGATACAACCTCCGACCCGATTCATAACCCAGAACCCGATCTAACTGCAAATTCAGAGAACTCATCATCAGAAGCTGATCCAATTGAAGCATTGGGCCCAAGCAATACAGCCCAAGAAGCAACAAGAGTTCAAAGGGAAGGAAAGGCTCCAGTATGGGCCAATGACTACCAAATGTAG 1779 0.4109 MLPQVLAIPVAILLVIFTFIIIFLSPFVLNPAAKPQHNNGSSKKTPPGPKPLPIIGNLHILGKFPHRTLQALATKYGPIMSLKLGQVPALVVSSPEVAQLFFKTHDSIFANRPKLQVVETLSYGRKGLVFTEYGGYWRNVRKLCTMQLLSAPKIEMFGPLRKKELGLLVNTLKKASDLHEVVDLSELIGEVVENITYNMILGRNKDDRFDIKGLIHEIMNLIGLFNLADFVPILASFDLQGLKRRAKKASKAVGEALDQIINDHEHPSSVESPEFKDFIDILLSYMNQPVDPHDHEQRHIVGRTNIKAIVLDLIAGAYDTSRTTIEWGMSELIKNPTTMNKLQNEIEALVGIHRQVEEKDLEKLPYLDMVVKEIFRLYPVGPLLVPHESSEDVTINGYFIEKNTRIMVNAWAIGRDPRIWSENSDMFFPERFENNDIDVKGHDFRLIPFGSGRRGCPGMNMGLITVKIILAQLVHCFSWELPLGMSPMDLDMTEEFGLSIPRTSQGNPKMVSISNHPTESSLFKDALGNALSIYDTTSDPIHNPEPDLTANSENSSSEADPIEALGPSNTAQEATRVQREGKAPVWANDYQM 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242543g00003 592 PANTHER CYTOCHROME P450 93A3-LIKE 35 504 - -
Stsc242543g00003 592 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242543g00003 592 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242543g00003 592 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242543g00003 592 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242543g00003 592 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242543g00003 592 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242543g00003 592 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242543g00003 592 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242543g00003 592 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242543g00003 592 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242543g00003 592 MobiDBLite consensus disorder prediction 535 576 - -
Stsc242543g00003 592 Pfam Cytochrome P450 46 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242543g00003 592 Coils Coil 339 359 - -
Stsc242543g00003 592 SUPERFAMILY Cytochrome P450 46 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242543g00003 592 Coils Coil 239 259 - -
Stsc242543g00003 592 Gene3D Cytochrome P450 36 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242543g00003 592 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Stsc242543g00003 592 MobiDBLite consensus disorder prediction 535 592 - -
Stsc242543g00003 592 FunFam Cytochrome P450 83B1 33 506 - -
Stsc242543g00003 592 CDD CYP71-like 75 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242543g00003 Stsc-Chr242543 20400 23327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242543g00003 36 502 Cytochrome P450 AT3G48310 37.821 7.84e-121 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242543g00003 - - adu:107490427 828.55