Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242542g00003 GCAGTTGCATGGGAAGCAGGGAAGCCATTGGTGATTGAAGATGTGGAGGTTGCTCCTCCACAAGAAAAAGAAGTAAGGATTAACATCAAATATTCATCACTTTGCCACACAGATCTGTACTTCTGGGAATCTAAGTGCCTACCACCAACATTTCCACGGATATTAGGGCACGAAGCATCTGGGGTTGTGGAGAGCGTAGGTGATGGTGTATCAGATCTGAAGGCAGGTGATCATGTGCTTCCACTATTCACCGGAGAGTGTGGGGAATGCCCACACTGCAAAAGTGAAGAAAGCAACATGTGTGAAGTGTTGCGAATAAACCCATCAAGTGAGGTTATGATAAGTGATGGCAAATCAAGGTTCTCTACCATGAAAGCCAAGAAGCCTATAACTATAAGTCACTTCCTTGGCACATCAACCTTCAGCCAATACACAGTTGTTCATTCAGGAAGTGTTGTTAAGATCAATCCCTCACTTCCTTTGGACAAAGCTTGTCTCCTCAGTTGTGGCATCTCAACAGGGATAGGATCAGTTCTCAATGTTGCCAAACCGAAGAAGGGTGCTTCAATAGCAATATTTGGGCTTGGAGCTGTTGGGCTTGCTGCAGCTGAAGGTGCAAGAATTGGTGGAGCATCCAGGATAATTGGAATTGACATGAATCCTAACAAAATTAAGTATGCCAAGAAATTTGGACTAACTGACTTCATAAATCCTGAGGAACATGAAAAACCAGTTCATGAGGTCCTGAAAGAGATGACAAATGGTGGAGTTGATAGGTGCATAGAATGCACTGGAAACATTAATGCCTTAATGTCTGCAATGGAAGCTCTCCATGATGGATGGGGTGTTGCTGTACTTGTTGGAGTGCCTAGTGCTGATGCAGTTTTCAAGACTAATCCCTTCAATTTTCTTGATGGAAAGACAATTACAGGCACAGCATTTGGGAACTACAAGCCTAAAACTGGCCTTCCAACACTGCTTGATATCTTCATGAACAACAAATTGGAGCTGGACAAGTTTATAACCCACAGAGTTCCTCTCTCTGAAATCAATAAAGCCTTTGATTACATGATCAAAGGAGAGGGCCTAAGGACAATCATAGACATGAAAAACTAG 1116 0.4301 AVAWEAGKPLVIEDVEVAPPQEKEVRINIKYSSLCHTDLYFWESKCLPPTFPRILGHEASGVVESVGDGVSDLKAGDHVLPLFTGECGECPHCKSEESNMCEVLRINPSSEVMISDGKSRFSTMKAKKPITISHFLGTSTFSQYTVVHSGSVVKINPSLPLDKACLLSCGISTGIGSVLNVAKPKKGASIAIFGLGAVGLAAAEGARIGGASRIIGIDMNPNKIKYAKKFGLTDFINPEEHEKPVHEVLKEMTNGGVDRCIECTGNINALMSAMEALHDGWGVAVLVGVPSADAVFKTNPFNFLDGKTITGTAFGNYKPKTGLPTLLDIFMNNKLELDKFITHRVPLSEINKAFDYMIKGEGLRTIIDMKN 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242542g00003 371 Pfam Zinc-binding dehydrogenase 197 317 IPR013149 -
Stsc242542g00003 371 CDD alcohol_DH_plants 1 368 - -
Stsc242542g00003 371 Gene3D - 174 312 - -
Stsc242542g00003 371 FunFam Alcohol dehydrogenase 6 1 189 - -
Stsc242542g00003 371 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 56 70 IPR002328 GO:0008270|GO:0016491
Stsc242542g00003 371 PANTHER ALCOHOL DEHYDROGENASE 1 367 - -
Stsc242542g00003 371 SUPERFAMILY GroES-like 320 367 IPR011032 -
Stsc242542g00003 371 Pfam Alcohol dehydrogenase GroES-like domain 23 155 IPR013154 -
Stsc242542g00003 371 Gene3D - 1 364 - -
Stsc242542g00003 371 FunFam Alcohol dehydrogenase class-P 174 312 - -
Stsc242542g00003 371 SUPERFAMILY GroES-like 1 177 IPR011032 -
Stsc242542g00003 371 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 159 333 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242542g00003 Stsc-Chr242542 17940 22621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242542g00003 24 371 Monolignol Biosynthesis Gene Families AT1G72680 24.217 1.28e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242542g00003 K18857 - nnu:104602143 529.25