Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242538g00001 ATGTCGTCGACGCTTCTGGAAGTGACACGTGCCTCGCACGAGGAGGTGGAACGGTTGGAAAGGGTGATAGTGAAGGACCTTCAGAATGAACCAGCTTCCAACAAAGACCGCTTGTTTCAGAGCCACCGCGTTCGGAACATGATTGACACCATCACTTCCACCACACACAAGCTTATTGAGATATATGAGGATAATGACAATGCTAGGAAGGACGAGATTGCTGCACTCGGAGGTCAAACTGCTACTGGAGTCAACAATGTATTTAGTGCTTTCTATGATCGTCTCAAAGAGATAAGAGAGTATCACAGGAAGCACCCTGTTGCCCGGGTTGTTGATGCTAATGACGATTATGAAGCACTCCTTAAAGAAGAACCTCAAATTGAGTTTAGTGGAGAGGAAGCTTTCGGTCGATACTTAGATATGCATGAGTTGTACCATCAATACATCAATTCAAAATTTGGAGAGCCAATTGAGTATTCTGCGTATCTTGATATTTTCTCAGAGGCAGAAAAGGTTCCACGCAAGAAGAAAATGACCAGGCAGTACAGAGAATATATGGAGAATCTGTTGGAGTATCTTTTGTACTTTTTCCAGCGGACGGAGCCCCTGCAAGATATTGATCGAATTTTCTCGAAGGTAGCAACTGAGTTTGAAGAAAATTGGGCTGCTGGGAAGGTACGGGGATGGGAGAATGAAAATCAGGAGAATGGACACGTACCTGCTCAGCACACTGCTCTTGATCTTAAGTGTTACAGTACAGTTGAAGAGCTAATGGGTGTGGGTCCTGAAAGGTTAAAGGAGGCACTTGCAGCATTAGGACTTAAGACGGGTGGTACACTTCAGCAACGTGCAGAGAGACTCTTCCTCACAAAGCACACACCTCTTGAAAAGCTGGACAGGAAGCATTTTGCTAAGGGAGCACGTGGTTCAGAGAAAAATGGGGTTGCTTCAGCTCCACAAGAAGATGAAAGTTCAAAAGAAATTGCATTAATGGAGGCCAAAATGAAGAAGCTGTGTGATTTGTTAGAAGATACAATTGCCCGAACAAAAGACAATGTCGTAAAGAAGCAAGCATTGACATATGAAGAAATTGAAGCAGAACGCGAAGAGGAGGAGACACAAGAGGACACTGAAAGTGAAGATGAGGAGCAGCAGATATATAATCCCCTAAAGTTGCCAATGGGATGGGATGGGAAGCCCATACCTTACTGGTTGTATAAATTGCATGGTCTTGGTCAGGAATTTAAGTGTGAGATATGTGGGAACTACAGTTATTGGGGGCGTCGGGCTTTTGAACGTCATTTTAAAGAGTGGCGCCATCAGCATGGCATGCGATGCCTTGGTATACCAAATACCAAAAATTTCAATGAGATCACATCAATTGAGGAAGCAAAGGAACTATGGAAGAAGATACAGCAACGACAAGGAGTGAACAAGTGGCGCCCGGATTTGGAAGAAGAGTACGAAGACAAGGAAGGAAACATCTATAATAAGAAGACTTACACTGATTTACAGCGCCAGGGACTGATATAA 1533 0.4397 MSSTLLEVTRASHEEVERLERVIVKDLQNEPASNKDRLFQSHRVRNMIDTITSTTHKLIEIYEDNDNARKDEIAALGGQTATGVNNVFSAFYDRLKEIREYHRKHPVARVVDANDDYEALLKEEPQIEFSGEEAFGRYLDMHELYHQYINSKFGEPIEYSAYLDIFSEAEKVPRKKKMTRQYREYMENLLEYLLYFFQRTEPLQDIDRIFSKVATEFEENWAAGKVRGWENENQENGHVPAQHTALDLKCYSTVEELMGVGPERLKEALAALGLKTGGTLQQRAERLFLTKHTPLEKLDRKHFAKGARGSEKNGVASAPQEDESSKEIALMEAKMKKLCDLLEDTIARTKDNVVKKQALTYEEIEAEREEEETQEDTESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242538g00001 510 Pfam SF3a60/Prp9 C-terminal 391 510 IPR024598 GO:0000398|GO:0003723|GO:0005681
Stsc242538g00001 510 Coils Coil 354 381 - -
Stsc242538g00001 510 ProSiteProfiles Zinc finger matrin-type profile. 415 446 IPR000690 GO:0003676|GO:0005634|GO:0008270
Stsc242538g00001 510 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 128 177 IPR031774 -
Stsc242538g00001 510 Pfam Splicing factor SF3a60 binding domain 85 106 IPR021966 -
Stsc242538g00001 510 PANTHER SPLICING FACTOR SF3A-RELATED 235 313 - -
Stsc242538g00001 510 MobiDBLite consensus disorder prediction 300 324 - -
Stsc242538g00001 510 MobiDBLite consensus disorder prediction 364 384 - -
Stsc242538g00001 510 MobiDBLite consensus disorder prediction 364 383 - -
Stsc242538g00001 510 Pfam Replication stress response SDE2 C-terminal 224 305 IPR025086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242538g00001 Stsc-Chr242538 7666 12876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242538g00001 1 510 C2H2 Transcription Factor Family AT5G06160 74.902 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242538g00001 K12827 - gmx:100815393 894.419