LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc242532g00006	ATGGAGTTCTTCAAGTGTTCAATTGGTGGAGAGGTGTATGGACATGGTGTGACTGAAATTGAACGGGGAATAGCAGAGCGCAATGGCATGAAAGTTGAGGAGTATAAATCACCCAATGCAGTGCAAGAGAAAGGTTTTAATTTTGATGATTCCAGGATTATGAGAGGAGCATGGAGGAATGAGTCTAATCCTGATATCTGCAAGGAGTTCTTCAGATGTCTTGCTATATGTCATACTGTACTTCCTGAGGGTGAAGAGTCCCCTGAAAAGATTAAGTATCAAGCTGCGTCTCCTGATGAGTCTGCTTTGGTTATTGCTGCAAAGAACTTTGGTTTCTTCTTCTACAGACGCACACCGACAGCTATATATGTCCGTGAATCTCATGTTGAGAAGATCGGCCAAATTCAAGATGCATCTTATGAAATTTTAAATGTACTTGAGTTTAATAGTACAAGGAAGCGTCAGTCTGTTGTATGTCGTTATTCAGATGGGAGGCTTGTATTGTACTGCAAGGGTGCTGATACGGTAATCTATGAGAGACTGGCTGATGGTAATAATGAAATCAGGAACATAACAAGAGAGCATTTGGAACAATTTGGATCTGCCGGACTACGCACATTATGCCTGGCATACAAAGAATTGCATCCTGATGCTTATGAAAGCTGGAATGAGAAGTTTATCCAGGCCAAGTCTTCTCTACGTGATCGTGAGAAGAAATTAGATGAGGTTGCGGAACTGATTGAAAATGGTCTCACTTTAATTGGTTGCACTGCCATAGAAGACAAGCTTCAGGAGGGAGTACCAGGTTGCATAGCGACTCTTCAACGGGCTGGTATCAAAATATGGGTTCTTACAGGGGACAAGATTGAAACAGCAATAAACATAGCCTATGCATGCAATTTAATAAGCAATGAGATGAAGAAATTTATTATCAGTTCGGAAACCGATGCAATAAGAGAAGTTGAAGACAAGGGTGACCCAGTGGAAATTGCACGATTTATTAAAGATGAAGTTAAAAAAGAGCTAAAGAAATGCACTGAGGAAGCACGGAGCTATTTTAACTCTGGATCTGCACCAAAATTAGCACTTGTAATTGACGGGAAGTGTCTAATGTATGCATTGGATCCAAGTTTAAGAGTGATGCTGTTGGATTTAGGTTTGAATTGTCATTCTGTCGTTTGCTGCCGAGTTTCTCCTTTACAGAAAGCACAGGTAACAAGTATGGTCAAGAAAGGTGCACGTAAAATAACACTTGGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTGTTGGCATAAGTGGGATGGAAGGGATGCAAGCTGTGATGGCTAGTGACTTTGCCATTGCACAGTTCCGTTACCTGGAAGATTTGCTGCTTGTTCATGGTCGCTGGTCATATCTACGTGTATGCAAGGTGGTATTATACTTCTTTTACAAGAATCTCACATTCGCTCTCACTCAGTTTTGGTTTACTTTTCAAACCGGCTATTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCTTTATATAATGTCATCTTCACAGCAGTCCCTGTGGTCATTGTTGGGCTATTTGACAAGGATGTCAGTGCGTCTTTATCCAAGAAGTATCCTGAGCTATACAAGGAGGGAATAAAGAATGTCTACTTCAAATGGAGAGTTGTGGCTTTGTATGCCTTTTTTTCTATATACCAGTCTCTAATATTCTTCTATTTTGTTGCCACAACAACCCTGACTGCTAAGAACTTAGATGGAAAGATTTTTGGACTATGGGATATCAGTACAATGGCCTTCACGTGTGTTGTAATAACCGTCAACTTGCGACTGCTTTTGATCTGTAATTCAATAACAAGATGGCACTATATTAGCGTCGGTGGAAGTATATTAGCCTGGTTTATCTTTGTTTTTATATACTCATTGATTTGTCATCTTTTTGGTCGCGAGAATATTTATTTTGTCATCTTTGTCTTGATGAGTACATTCTATTTCTACTTAATGCTACTACTTGTTCCCATTGCTGCGCTCTTCTGTGACTTTGTTTACCAAGGGGTTCAAAGATGGTTCTTCCCCTATGATTATCAGGTCATTCAAGAAATGCACAAGAATGAACTCAATGACACTGGAAGGGCAAAATTGCTGGAGGTAGGGAACCAGCTTACGGAAGACCAAGCAAGGAGCTATGCTGTATCTCGGCTACCACCCCAGATATCAAAGCACACCGGCTTCGCTTTCGATTCGCCGGGGTATGAGTCATTCTTTGCTTCACAGATTGGTGTATATGCCCCTCCAAAGGCATGGGATGTTGCAAGACGAGCTAGCATGAAATCACGGCTAAAGATTGTTCTGCAAAAGTGA	2376	0.4099	MEFFKCSIGGEVYGHGVTEIERGIAERNGMKVEEYKSPNAVQEKGFNFDDSRIMRGAWRNESNPDICKEFFRCLAICHTVLPEGEESPEKIKYQAASPDESALVIAAKNFGFFFYRRTPTAIYVRESHVEKIGQIQDASYEILNVLEFNSTRKRQSVVCRYSDGRLVLYCKGADTVIYERLADGNNEIRNITREHLEQFGSAGLRTLCLAYKELHPDAYESWNEKFIQAKSSLRDREKKLDEVAELIENGLTLIGCTAIEDKLQEGVPGCIATLQRAGIKIWVLTGDKIETAINIAYACNLISNEMKKFIISSETDAIREVEDKGDPVEIARFIKDEVKKELKKCTEEARSYFNSGSAPKLALVIDGKCLMYALDPSLRVMLLDLGLNCHSVVCCRVSPLQKAQVTSMVKKGARKITLGIGDGANDVSMIQAAHVGVGISGMEGMQAVMASDFAIAQFRYLEDLLLVHGRWSYLRVCKVVLYFFYKNLTFALTQFWFTFQTGYSGQRFYDDWFQSLYNVIFTAVPVVIVGLFDKDVSASLSKKYPELYKEGIKNVYFKWRVVALYAFFSIYQSLIFFYFVATTTLTAKNLDGKIFGLWDISTMAFTCVVITVNLRLLLICNSITRWHYISVGGSILAWFIFVFIYSLICHLFGRENIYFVIFVLMSTFYFYLMLLLVPIAALFCDFVYQGVQRWFFPYDYQVIQEMHKNELNDTGRAKLLEVGNQLTEDQARSYAVSRLPPQISKHTGFAFDSPGYESFFASQIGVYAPPKAWDVARRASMKSRLKIVLQK	791

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc242532g00006	791	Pfam	Cation transport ATPase (P-type)	84	180	-	-
	Stsc242532g00006	791	SUPERFAMILY	Calcium ATPase, transmembrane domain M	38	697	IPR023298	-
	Stsc242532g00006	791	NCBIfam	HAD-IC family P-type ATPase	393	499	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Stsc242532g00006	791	FunFam	Phospholipid-transporting ATPase	97	252	-	-
	Stsc242532g00006	791	Gene3D	-	254	460	IPR023214	-
	Stsc242532g00006	791	Gene3D	-	116	253	IPR023299	GO:0000166
	Stsc242532g00006	791	PANTHER	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	1	734	-	-
	Stsc242532g00006	791	SUPERFAMILY	HAD-like	247	467	IPR036412	-
	Stsc242532g00006	791	FunFam	Phospholipid-transporting ATPase	253	460	-	-
	Stsc242532g00006	791	SUPERFAMILY	Metal cation-transporting ATPase, ATP-binding domain N	28	259	IPR023299	GO:0000166
	Stsc242532g00006	791	Pfam	Phospholipid-translocating P-type ATPase C-terminal	448	697	IPR032630	-
	Stsc242532g00006	791	NCBIfam	phospholipid-translocating P-type ATPase	1	705	IPR006539	GO:0000287\|GO:0005524\|GO:0015914\|GO:0016020\|GO:0140326

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc242532g00006	Stsc-Chr242532	18458	24473	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc242532g00006	1	787	Primary Pumps ATPases	AT1G59820	76.679	0.0	1302

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc242532g00006	K14802		-	gmx:100815547	1413.67