Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242532g00004 ATGCCGTCACATGCGGATCTGGACGTTCAGATCGAGCACCTGATGGAGTGCAAGCCTCTGTCGGAGGCGGAGGTGAAGGCGCTCTGCGATCAGGCGCGGACGGTTCTGGTTGAGGAGTGGAATGTGCAGCCGGTGAAGTGCCCTGTCACCGTCTGCGGCGACATTCACGGCCAGTTCTACGATCTAGTCGAGCTATTCCGCATAGGTGGCAATGCTCCTGATACCAATTACCTCTTCATGGGTGATTATGTAGATCGCGGATACTATTCTGTGGAGACTGTTACACTTCTGGTGGCCTTGAAAGTCCGCTACAGGGATAGAATTACGCTTACCAGGGGAAATCATGAGAGCCGTCAAATTACTCAAGTGTATGGCTTCTATGATGAATGCTTAAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACCGACTTGTTTGATTATTTACCTCTGACTGCCCTTATTGAGAGCCAGATTTTCTGCTTGCATGGAGGTCTCTCTCCTTCTTTGGATACATTAGATAATATCAGGGCATTGGATCGTATACAAGAGGTTCCACATGAAGGACCAATGTGTGNNNNNNNNNNGGGGAATATCTCCACGTGGTGCTGGCTATACATTTGGACAAGATATAGCTGCTCAGTTTAA 651 0.4716 MPSHADLDVQIEHLMECKPLSEAEVKALCDQARTVLVEEWNVQPVKCPVTVCGDIHGQFYDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITLTRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCXXXXGNISTWCWLYIWTRYSCSV 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242532g00004 216 Gene3D - 2 204 IPR029052 -
Stsc242532g00004 216 SUPERFAMILY Metallo-dependent phosphatases 6 206 IPR029052 -
Stsc242532g00004 216 SMART pp2a_7 20 216 IPR006186 GO:0016787
Stsc242532g00004 216 PRINTS Serine/threonine phosphatase family signature 174 201 IPR006186 GO:0016787
Stsc242532g00004 216 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Stsc242532g00004 216 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Stsc242532g00004 216 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Stsc242532g00004 216 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
Stsc242532g00004 216 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 5 194 IPR047129 GO:0004722
Stsc242532g00004 216 Pfam Calcineurin-like phosphoesterase 48 193 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242532g00004 Stsc-Chr242532 8399 12084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242532g00004 49 167 Calmodulin-binding Proteins AT5G63870 44.262 1.84e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242532g00004 K04382 - nnu:104596284 397.127