Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242530g00004 ATGCCAGGAAAAGCCGAATCTGATGAATGGCGGGTGAAGCGAAGTGAGCAGATTCAGTTTCAAGCTGGTGTTTATGCTCAGCCGTGGTGGCGCGGTGGAGCCGGGGAGATTGCACCGAAATCATCATCAGTAGATCAGCAGCTGAATGGTTCATCAGCCATGAATGGTGGTGGTGTCACAGTCACAACACAACCAGAGGACAATGAAGTTGTTGCTTTCAGTAAAGAGATGCAGTCTTTGATTTCAACATCACTGCCTGGAATTGATAACTCAGGTGGAGATGTTACCAAAGAACACCAGAACATCAAACATGCTTTTTCCTCAACCCCATTTACCATGGGCAAACACCTTGGTCCAAATTCCAAGACTGAAAGTGTTGGTCATTCAGTTATTTTAACGGCACATCCTTATTTTGATGCCCAGTATGGTGGAGGCTTGGCACCCTATGGGCAACAAACTATGATAAACCCTCAGCTGTATGGGATGAACCATGCTAGAATGCTTTTGCCACTTGAAATGGAAGAGGAGCCAGTTTATGTCAATGCGAAGCAGTATCATGGTATTCTGAGAAGAAGACAGTCACGAGCTAAGGCCGAGCTTGAAAAGAAAGTGATCAAAGTTAGAAAGCCATATCTTCACGAATCGCGTCACCTTCATGCTATGAGAAGGGCAAGGGGTAATGGTGGTCGCTTTCTCAATACAAAGAAGCTTGAAGGCAACAATATCAATGCAAACCCCTCAATGGAATCTGGAAGCTCGCTTTCCGCAGCTCCTTTACATTCCAACAATGATCACTATGATGCATCGCGGTCCATAGTTCAGGACACCGAAAAAATGCAGAATTTCTCCATTGGTTTCCATGGTAGCAACGGTCGGTCTTCAATGTATCATACACAGTTGAATGGAAGAAATGAGGGACATTGCTTTGATAGGGAGAGGCAAAGCATGGTTATGCATGGAGCCCCAAATGGGGCTCTTGACTAA 984 0.4533 MPGKAESDEWRVKRSEQIQFQAGVYAQPWWRGGAGEIAPKSSSVDQQLNGSSAMNGGGVTVTTQPEDNEVVAFSKEMQSLISTSLPGIDNSGGDVTKEHQNIKHAFSSTPFTMGKHLGPNSKTESVGHSVILTAHPYFDAQYGGGLAPYGQQTMINPQLYGMNHARMLLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHAMRRARGNGGRFLNTKKLEGNNINANPSMESGSSLSAAPLHSNNDHYDASRSIVQDTEKMQNFSIGFHGSNGRSSMYHTQLNGRNEGHCFDRERQSMVMHGAPNGALD 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242530g00004 327 MobiDBLite consensus disorder prediction 234 265 - -
Stsc242530g00004 327 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Stsc242530g00004 327 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Stsc242530g00004 327 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Stsc242530g00004 327 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 63 290 IPR001289 GO:0003700|GO:0006355
Stsc242530g00004 327 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Stsc242530g00004 327 MobiDBLite consensus disorder prediction 229 265 - -
Stsc242530g00004 327 Gene3D - 174 235 - -
Stsc242530g00004 327 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Stsc242530g00004 327 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242530g00004 Stsc-Chr242530 18734 23828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242530g00004 2 257 CCAAT-HAP2 Transcription Factor Family AT5G12840 36.704 5.69e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc242530g00004 CBFB_NFYA 2.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242530g00004 K08064 - gmx:100782085 347.436