Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242527g00003 ATGGCTTTCCTTCGTAGAGCTGGGAATATACTAAGCCAAGCCACGAGCAGAAAGATCGGTTCGGATTTCTGTTCAATCAACTCTGTTTTCCGATCTGTACGGTGCATGTCAAATGCTCCGAATACGAAGCTCTTCATAGGAGGTGTTTCTTATTCCACTGATGAGCAGAGTTTGAGGGAAGTTTTTGGGAAATATGGTGATGTTGTTGATGCAAGGATAATTGTGGACCGTGATTCAGGTAGATCCAGAGGATTTGGGTTTATTACTTATAGCTCGGTTGAGGAGGCGTCGAGCGCCATTCAGGCCTTAGATGGGCAGGATCTACATGGTCGTCGGGTTAAGGTAAATTTTGCAAGTGAGAGACCTCGTGGATTTCAAGGTGGTGGTTTTGGTGGGTCTTTTGACAATGCTCCCTATGGTGCTTTAGCTGGTTCTGGATACCAAGGTGGTTATGGTAACTCTCCATACGGTGCTAGTTCAGGTGGTGGTGGCGGCTATGGTGGTGCTGGTGGTGCATATGGTGGCAATGTTGCTGGAGGTTATGGTAACGGAAGAAGTGGATATGGCGGAGATGGCTATGGATCAGGTGGTAATTTTGCAGGCAGTGCCTCTGGTGAGAACTATGATTCTGATAACAGTTTTGGAACTGGAACAGCTGGTGGCAATTACAGTGGAAGTGGGATGAATAATGCAAATGACAGTAGTTTCGCAAGCGGAGGCTATGGTGGTAACAGTGGGAATGGTGGAAGAAATGATATTGGTACTACTTATGGTAATGCTGCTACTAGTGGTGGAGGCTATGGCGGCTATGTCCCGGCTTCTGGATTTGACAGGAGGAGCAGTGATTACAACACTTCTGGTGGATTTGCTAACAGTGATAACCATGCTAGCGCTGCTGGTGGTGGCAGCAACAGTTTCACTGATAGTCAATACAATGGAAGTGCCATGGCTGGGTATGGCAGTGGTGGTGTGGGTTCTGGCAGCGGTTTTGGTGGCGGATATGATGGAAATGGAGCAACAGGATATGGTAGCAGTAGCACTAATGAATTCAATAACAATCAAGGCACTAATGTGGATGGTTTTGGAGGCTCCATGGAACAAAATTTCAGGGGTGACTATGAGGAATCCGCTGCTTATGCAAAACGGGCTTGA 1152 0.4714 MAFLRRAGNILSQATSRKIGSDFCSINSVFRSVRCMSNAPNTKLFIGGVSYSTDEQSLREVFGKYGDVVDARIIVDRDSGRSRGFGFITYSSVEEASSAIQALDGQDLHGRRVKVNFASERPRGFQGGGFGGSFDNAPYGALAGSGYQGGYGNSPYGASSGGGGGYGGAGGAYGGNVAGGYGNGRSGYGGDGYGSGGNFAGSASGENYDSDNSFGTGTAGGNYSGSGMNNANDSSFASGGYGGNSGNGGRNDIGTTYGNAATSGGGYGGYVPASGFDRRSSDYNTSGGFANSDNHASAAGGGSNSFTDSQYNGSAMAGYGSGGVGSGSGFGGGYDGNGATGYGSSSTNEFNNNQGTNVDGFGGSMEQNFRGDYEESAAYAKRA 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242527g00003 383 Gene3D - 29 134 IPR012677 -
Stsc242527g00003 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Stsc242527g00003 383 SMART rrm1_1 43 116 IPR000504 GO:0003723
Stsc242527g00003 383 PRINTS Eggshell protein signature 193 203 - -
Stsc242527g00003 383 PRINTS Eggshell protein signature 238 256 - -
Stsc242527g00003 383 PRINTS Eggshell protein signature 38 54 - -
Stsc242527g00003 383 PRINTS Eggshell protein signature 167 182 - -
Stsc242527g00003 383 MobiDBLite consensus disorder prediction 336 383 - -
Stsc242527g00003 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Stsc242527g00003 383 SUPERFAMILY RNA-binding domain, RBD 36 130 IPR035979 GO:0003676
Stsc242527g00003 383 CDD RRM2_NsCP33_like 43 118 - -
Stsc242527g00003 383 MobiDBLite consensus disorder prediction 339 363 - -
Stsc242527g00003 383 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 35 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242527g00003 Stsc-Chr242527 21484 23548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242527g00003 40 121 Eukaryotic Initiation Factors Gene Family AT3G16380 36.471 3.04e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242527g00003 K12741 - ccaj:109815980 229.18