Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242525g00003 ATGGGTGTCAAGAATTTGTGGGATATCCTCGAATCATGCAAGAAAACGGTTCCACTTCACCATCTCCAGAACAAGAGGGTTTGCGTGGATCTATCGTGCTGGATGGTTCAGCTTCATAATGTGAGCAAGTCACACGCTTGTTTGAAGGAGAAAGTTTACCTCAGAGGTCTCTTTCACCGCCTCAGAGCTCTCATTGCTCTCAATTGTAGCGTTGTTTTCGTTTCAGATGGGTCGATTCCTGCTATCAAGTTATCAACTTATAGGCGTCGCTTGAACATGGGGAAAGAGGTGGAACATAACGAAACTAACTCACAACAAGCGACATCGTTAAGAAGAAACATGGGGTCTGAGTTTTCTATAATGATAAAGGAGGCTAAAGCCTTGGGGATGGCTCTTGGTATTTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAACTTCGAGTCATTATGTGATGGATGTTTCAGTTCAGATTCAGATATATTTCTTTTCGGTGCAAGGACGGTGTATAGGGATATCTGTCTCGGGGATGGTGGACATATTGTTTGTTATGAGATGGCAGACATCGAAAAAGAACTTGGATTTGGAAGGGATTCACTGATTGCCCTCTCTTTACTTCTTGGCAGTGACTATTACCCCGGGGTTCATGGTTTGGGTCCGGAATCAGCTTGCCAGATTGTAAAATCGGTTGGCGACAAATTTATTCTTAAAAAAATTGCTTCTGAAGGGCTGGAATGGGCCAAAAGAAGAAAAGGAGGAGTGAATAATTTACAGAAAGACGATAAGGTTTTGCAAGTAATTAATGCTTATATGAAACCAAAATGTCACTCAGCGGATTCAGATGTGGTGCATCGGGCTTTTGCTCAATACCAGTTTCAACGTATTAAACTTCATCAGATATGTGCTGAATTGTTTGAGTGGCCTCCAGAGAGAACAGATGGTTACATCCTTCCGAGTATCGCTGAAAGAGATTTAAGGAGATTTGCAAATTTGCGGACAATTTCATCTGAACTTGGAGTGAACCCTCCTTTAGATGAGATCCCTGTGAAGTGTCCTGTATCAGAAATAGTCAAGAATCGAAGAGTTCAAGGGAGAGAATGCTATGAAGTTTCTTGGGAAAAAATGGATGGACTTGAAACTTCAGTAGTACCTGCAGATCTTATAAAAAGTGCATGTCCTGAGAAGATTTTGGAGTTTGAGGAGAAAAAAGCTCAGAAGAAGAAACAAAACATTCAGAAAAGAAGACCAAAGAAGAAGGAATCTACATCATCTGTGGCTGAACTTGATGAAAATCTTCAGAATTTGTTGCTGGATATCAATTTGGGAGACAAAGCCAACTGCAACGGCGACAGTTTCGGATTTTCAACTGCTATGGCTGCAACTGATGTCAGCACCTCAGACATTTCACATCGATCCGACAAGGACAGAGAACCTCTCAGAAACATATCTAACAATGTGGCTGTTTCTAGTTCCATTTCCATTTCAAGTGTACATAAAGTTGAGGTGATAGATCTTCTGAGCCCTTCACCAGCACCTAAGAAATCTCATGAACAACGATCAAGTAAACAAAATGTTGAAGTGATTAATTTGATTGACTTAGAAAATGACATGTCACCTGAACACAAGGAGAAAGCAAAAGACTTGAGATTGTTCTTAGCAGGTATTAGAAATGAAATGCACTGA 1698 0.4081 MGVKNLWDILESCKKTVPLHHLQNKRVCVDLSCWMVQLHNVSKSHACLKEKVYLRGLFHRLRALIALNCSVVFVSDGSIPAIKLSTYRRRLNMGKEVEHNETNSQQATSLRRNMGSEFSIMIKEAKALGMALGISCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTVYRDICLGDGGHIVCYEMADIEKELGFGRDSLIALSLLLGSDYYPGVHGLGPESACQIVKSVGDKFILKKIASEGLEWAKRRKGGVNNLQKDDKVLQVINAYMKPKCHSADSDVVHRAFAQYQFQRIKLHQICAELFEWPPERTDGYILPSIAERDLRRFANLRTISSELGVNPPLDEIPVKCPVSEIVKNRRVQGRECYEVSWEKMDGLETSVVPADLIKSACPEKILEFEEKKAQKKKQNIQKRRPKKKESTSSVAELDENLQNLLLDINLGDKANCNGDSFGFSTAMAATDVSTSDISHRSDKDREPLRNISNNVAVSSSISISSVHKVEVIDLLSPSPAPKKSHEQRSSKQNVEVINLIDLENDMSPEHKEKAKDLRLFLAGIRNEMH 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242525g00003 565 SUPERFAMILY Chromo domain-like 357 412 IPR016197 -
Stsc242525g00003 565 FunFam flap endonuclease GEN-like 2 2 199 - -
Stsc242525g00003 565 Gene3D - 2 199 - -
Stsc242525g00003 565 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 478 IPR006084 -
Stsc242525g00003 565 SUPERFAMILY PIN domain-like 3 215 IPR029060 -
Stsc242525g00003 565 Gene3D - 201 258 - -
Stsc242525g00003 565 Gene3D - 355 423 - -
Stsc242525g00003 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Stsc242525g00003 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Stsc242525g00003 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Stsc242525g00003 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Stsc242525g00003 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Stsc242525g00003 565 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Stsc242525g00003 565 SMART xpgineu 130 200 IPR006086 GO:0004518
Stsc242525g00003 565 MobiDBLite consensus disorder prediction 409 430 - -
Stsc242525g00003 565 FunFam Flap endonuclease GEN-like 1 200 257 - -
Stsc242525g00003 565 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 337 IPR036279 -
Stsc242525g00003 565 SMART xpgn3 1 97 IPR006085 GO:0004518
Stsc242525g00003 565 CDD PIN_GEN1 2 198 - -
Stsc242525g00003 565 Pfam XPG N-terminal domain 1 92 IPR006085 GO:0004518
Stsc242525g00003 565 CDD H3TH_XPG-like 203 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242525g00003 Stsc-Chr242525 7887 11597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242525g00003 1 236 Core DNA Replication Machinery Family AT5G26680 25.391 1.33e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242525g00003 K15338 - gmx:100806919 835.484