Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242523g00003 ATGAGTGGTGTCACACACCTTGAACCAGAACCAGACGATCCTTCTGAGTTTGTTGAAGTTGATCCAACTGGAAGATATGGAAGATACAATGAAATCCTCGGCAAAGGAGCTTCAAAGACAGTATATAGAGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAACTTTATGATTTCCTTCAAAGTCCTGAAGATCTTGAGAGGCTCTACTGTGAAATTCATCTCTTGAAGACATTGAAGCACAGGAACATTATGAAGTTCTACACATCTTGGGTTGACACTGCAAATAGGAACATCAATTTTGTCACTGAATTGTTCACTTCTGGTACTCTCAGACAGTATAGGCTAAAGCACAAGAGAGTGCATATCAGAGCAGTGAAGCATTGGTGCAGACAGATCCTGAGAGGGCTTCTCTATCTTCATAGCCATGATCCTCCTGTGATCCATAGAGATCTCAAATGTGACAATATTTTTATCAATGGAAACCAAGGGGAGGTGAAGATTGGAGATCTCGGCCTGGCTGCAATTCTTCGGAAATCTCATGCAGCTCATTGTGTAGGAACACCGGAATTCATGGCCCCCGAAGTTTATGAAGAGGCATATAACGAATTAGTAGACATATATTCCTTTGGTATGTGCATATTAGAGATGGTTACCTTTGAATATCCTTATAGTGAATGCACTCATCCAGCGCAAATCTACAAGAAAGTTATTTCCGGGAAAAAACCAGATGCTTTGTACAAAGTGAAGGATCCAGAAGTGCGAGAATTTGTCGAGAAATGCTTGGCAACCGTCTCTTTAAGGCTCTCTGCAAGGGAGCTTCTAGATGACCCATTTCTTCGAGTTGATGATTTCGATTATGATTTGAGACCTGTAGATAGTGGGGAACTGGATGACTTCGGCCCTCTCATTAGGCAGCCGTTGTTTGATCTTCATCGAAGCTATAGTAACATTAGTAACGAATACTCAAATGGTTTCGTGTATGAAGGAGACTGGTCTTCACACCCAGCTGAGATTGAACCTAATGGAATAGAACTTTTTGAGTACCATGATGATGATGACGAAGAACCCTCTGAAGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGCATATTTTTGAGATTAAGAATCGCGGATAAGGAAGGACGTATTCGGAATATTTATTTCCCATTTGACATTGAGATGGACACAGCAATTAGTGTGGCGACGGAAATGGTTGCAGAGCTCGACATTACTGATCAGGATGTTACCAGAATAGCTGATATGATAGATGGGGAAATTGCTTCTTTGGTCCCTGATTGGAAGTGCGGACCAGGAATCGATGAATCTCCCCGGTTTTCCAAACAGGGTCTCTGTCACAATTGTGTGTCGAATCATACCTCCAGCGGATCTCTTTTGGATTTCATTTCACAGAATCCGGGCAGCAAAAACCTGCAACTTGGTGAGTGTTGTAGGCGTGGGTGTGCTTCAATGCATGGACGGTTCGAAGAGATCACCTTTGAATCTGAAGATTACGACAATGATGTTAAGAATTTACCTAACATATCAAGCCAGTCACACAGCTTACAGTACCAGGGTTTATGGAATCAGCACGAAAGCCGTGAACTCAGTCCGGTAGCCTCCGATCAAAGCCATTCCGATGAGCAATACGAACAACTGGACAAATCAATAGCAGCTGAAGATAAAGGACAGGATCATTGGGAAACCAAGTTTGCCTCCAACACCGGAAGCGCTCTGGGAAATTTATCTGGAACCCACTATTTCTCTACTATTCGATCCTTAGGTTGTGACGCAGAGGGTGACTACGAGGAAGAGATCCAAAAGGAGCTGAGATGGCTCAAAGCGAAATACCAAATGGAGTTAAGGGAGCTCAAAGATCAACACCTCGGCCTAACATCAAAATCTTCTTCCAACGCCAATGACAAAGTGAAACACAAAGCTGAACAGGAACTTGTTATGCCGCCGCATTTGCTGACAGAAACATTGAAAGGAAGCAACGATATGATTCATTTGAAATGCTTTACCAATAACTTGAATTGTGATGACACTACTAACCATCCTCCTCATTGCAACAAGAGCAGCATCCCCGATTCGGATGCCCAAAGGGCCCAGAATCGCGAGGCGATGGAATCACTTAGTGAAGAAGAAGGTATGGTTACTGCTAAGAACTTTTTTTCTGGTACATTGCTTCCTCACTCACTTCATAGAACAGTTTCCCTTCCGGTTGATGCTGTTGATGTATAA 2268 0.4295 MSGVTHLEPEPDDPSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTELFTSGTLRQYRLKHKRVHIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVREFVEKCLATVSLRLSARELLDDPFLRVDDFDYDLRPVDSGELDDFGPLIRQPLFDLHRSYSNISNEYSNGFVYEGDWSSHPAEIEPNGIELFEYHDDDDEEPSEDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIYFPFDIEMDTAISVATEMVAELDITDQDVTRIADMIDGEIASLVPDWKCGPGIDESPRFSKQGLCHNCVSNHTSSGSLLDFISQNPGSKNLQLGECCRRGCASMHGRFEEITFESEDYDNDVKNLPNISSQSHSLQYQGLWNQHESRELSPVASDQSHSDEQYEQLDKSIAAEDKGQDHWETKFASNTGSALGNLSGTHYFSTIRSLGCDAEGDYEEEIQKELRWLKAKYQMELRELKDQHLGLTSKSSSNANDKVKHKAEQELVMPPHLLTETLKGSNDMIHLKCFTNNLNCDDTTNHPPHCNKSSIPDSDAQRAQNREAMESLSEEEGMVTAKNFFSGTLLPHSLHRTVSLPVDAVDV 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242523g00003 755 MobiDBLite consensus disorder prediction 1 20 - -
Stsc242523g00003 755 Gene3D Transferase(Phosphotransferase) domain 1 110 289 - -
Stsc242523g00003 755 Gene3D - 377 442 - -
Stsc242523g00003 755 ProSiteProfiles Protein kinase domain profile. 27 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242523g00003 755 MobiDBLite consensus disorder prediction 698 715 - -
Stsc242523g00003 755 SUPERFAMILY Protein kinase-like (PK-like) 30 285 IPR011009 -
Stsc242523g00003 755 FunFam probable serine/threonine-protein kinase WNK9 110 289 - -
Stsc242523g00003 755 MobiDBLite consensus disorder prediction 698 723 - -
Stsc242523g00003 755 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Stsc242523g00003 755 FunFam probable serine/threonine-protein kinase WNK9 377 461 - -
Stsc242523g00003 755 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Stsc242523g00003 755 SMART serkin_6 27 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242523g00003 755 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Stsc242523g00003 755 Coils Coil 615 642 - -
Stsc242523g00003 755 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 653 - -
Stsc242523g00003 755 MobiDBLite consensus disorder prediction 541 560 - -
Stsc242523g00003 755 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242523g00003 755 CDD STKc_WNK 25 284 - -
Stsc242523g00003 755 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 380 434 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242523g00003 Stsc-Chr242523 12119 15834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242523g00003 12 542 MAP Kinase Kinase Kinase AT3G22420 57.443 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Stsc242523g00003 Pkinase 7.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242523g00003 K08867 - gmx:100775959 1232.62