Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242516g00003 ATGGGTTCCAAAAATTCCATGAGTGTTACTGTTAGAGTGTTGATGGTGGCATTGTTGTTGTGTGCATCAATGTCCATTAATAACTCTCAGCTCAGTACCACGTTCTACTCAAAGACATGTCCCCATTTGTTTTCTATTGTGTTTTTTGTCATAGCTAACGCTTCCATCACTGATCAAAGAATCGGTGCCAGCCTCCTCAGGCTTCACTTCCATGACTGCTTTGTTCAAGGTTGTGATGCATCAATATTGCTGAACAACACAGCAACAATAGAGAGCGAACAAGATGCATTTCCAAACATAAACTCAATAAGGGGTTTGGATGTGGTCAACAAAATCAAGACAGCTGTCGAAGCTGATTGTCCCAACACCGTTTCTTGTGCTGATATTCTTGCTCTTGCAGCTCAAATCTCTGTTTCTATGGGAGGTGGTCCCCAATGGTCAGTTCCATTGGGAAGAAGAGACAGCTTAACAGCGAATCGAAGCCTTGCTAATCAAGACCTTCCACCACCATTCGCCACACTTCCTCAGCTTAAAGATTTCTTTTCTCGTCAGGGTCTCGACACTACTGATTTAGTTGCACTCTCCGGGGCTCATACAATTGGAAGAGCTCACTGCCGCAATTTCGTGAACCGATTATACAATTTCAACAACACAGGCAATCCTGATCCAACATTGAACACAAATTACTTACAAACATTGCGAATGATATGTCCCCAAGATGGAAGTGGTGACAATAATAACCTAACCAACTTGGATGTTTCAACCCCAAATAAATTTGACAACAAATATTACTCCAATCTTGTGTCTCAAGAAGGATTGCTTCAGAGCGATCAAGAGCTTTATTCAACTCCTGGGGCAGATACCATTACCCTTGTCAACACCTATAGCAATGACATGCATTCATTCTTTGACCAATTCACAGACTCAATCATCAAAATGGGTAATATTAGTGTGCTCACAGGAAATCAAGGAGAGATCCGCTCTCAATGTAACTTTGTTAATGGCCCATAG 1011 0.4184 MGSKNSMSVTVRVLMVALLLCASMSINNSQLSTTFYSKTCPHLFSIVFFVIANASITDQRIGASLLRLHFHDCFVQGCDASILLNNTATIESEQDAFPNINSIRGLDVVNKIKTAVEADCPNTVSCADILALAAQISVSMGGGPQWSVPLGRRDSLTANRSLANQDLPPPFATLPQLKDFFSRQGLDTTDLVALSGAHTIGRAHCRNFVNRLYNFNNTGNPDPTLNTNYLQTLRMICPQDGSGDNNNLTNLDVSTPNKFDNKYYSNLVSQEGLLQSDQELYSTPGADTITLVNTYSNDMHSFFDQFTDSIIKMGNISVLTGNQGEIRSQCNFVNGP 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242516g00003 336 PRINTS Plant peroxidase signature 266 283 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 PRINTS Plant peroxidase signature 250 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 PRINTS Plant peroxidase signature 308 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 FunFam Peroxidase 34 175 - -
Stsc242516g00003 336 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601
Stsc242516g00003 336 Gene3D Peroxidase, domain 2 168 313 - -
Stsc242516g00003 336 SUPERFAMILY Heme-dependent peroxidases 30 334 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 CDD secretory_peroxidase 30 333 IPR033905 GO:0004601|GO:0042744
Stsc242516g00003 336 ProSiteProfiles Plant heme peroxidase family profile. 30 334 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Stsc242516g00003 336 FunFam Peroxidase 168 313 - -
Stsc242516g00003 336 Pfam Peroxidase 54 298 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 Gene3D - 35 334 - -
Stsc242516g00003 336 PANTHER PEROXIDASE 72-RELATED 28 333 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 PRINTS Haem peroxidase superfamily signature 252 267 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc242516g00003 336 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242516g00003 Stsc-Chr242516 16121 19270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242516g00003 1 334 Peroxidase AT2G38390 54.627 4.00e-128 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242516g00003 K00430 - gmx:548068 463.766