Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242516g00002 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGATGCTGCTCCCCCCGCCGCCGCCACCGCCTCCGCTCCCTCCGCCGGACCTCTCTCCAATCAAAACGATTCCACAGCGGCGGCCGCTGCAGCCGCCGTTCCTAATGGCGCTGCCGCACCTGCGCCCACATCTGGAGATCCCGGAGCTGCCGGTAACGTGCCTGGGCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTAAGGAGCTTGTGTATGAAGGGAGACGCTTGCGGGTTCTTGCACCAGTACGACAAGGCGAGGATGCCGGTGTGCCGGTTCTTTCGGCTTTACGGTGAGTGCCGCGAGCAGGATTGCGTGTACAAGCACACCAACGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCTAATGGGCCTGATTGCCGATACAGGCATGCGAAATCTGCTGGACCTCCACCTCCTGTTGATGAGGTCCTTCAAAAGATCCAGCATTTATATTCTTACAACTACAATGCATCTAACAAATTTTTCCAACAAAGGGGTTCAAACTATAATCAACAAGCTGAAAAATCTCAATTTCCCCAAGGAAATAATCCTACAAACCAAGCTGTTGCTGGAAAACCAGTACCAGCGGAGTCGGGTAATGTTCAGCAGCAACAAGTTCAACAGGCTCAGCAGCCAGTCAACCAAAGCCAAGTGCAAAGTGTTGCAAATGGTCAGCCCAATCAGGCGAATAAAACTGCAACTCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCAGTACAACAAGGAGTATGGGCAACACAAAGGAGCAATGAGTCGAAACTCAACGAGGCTTTTGATTCTGTGGAAAATGTTATACTGATTTTCTCAGTCAACCGAACTCGCCATTTCCAGGGTTGTGCAAAGATGACCTCCAGAATTGGTGGTTCTGTTGCTGGGGGAAACTGGAAATATGCTCATGGAACAGCACATTATGGGCGGAATTTCTCTGTTAAATGGTTGAAGTTATGCGAACTGTCATTCCACAAAACTCGCCATTTGAGGAATCCATACAATGAAAATTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAACCCTCTATTGGTGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAGCTTATGGCTATCTCCATTGCAGCAGAGTCTAAACGAGAAGAAGAGAAGGCAAAGGGAGTGAATCCTGACAATGGAGGAGAGAATCCGGATATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAAGAAGAAAGTGACGAAGAGGAAGAGAGCATTGGTCATGTTGTTGGGCCAGCTGTTCAAGGCAGAGGTAGGGGCAGAGGCATGATGTGGCCGCCTCACATGCCTCTTGCACGGGGAGCCAGACCTATGCCTGGAATCCCAGGTTTTAACCCAGTAATGATGGGTGATGGATTATCATATGGGCCTGTTGGACCCGATGGCTTTGGTATGCCAGATCTTTTTGGTGTGGGCCCTCGCGGTTTTCCTCCATATGGTCCTAGGTTCTCTGGTGATTTTGCAGGACCCCCAGCAGCCATGATGTTCCGTGGACGACCCTCCCAACCTGGGATGTTTCCAGGTGGTGGATTTGGGATGATGATGAATCCTGCACGTCCTCACTTTATGGGTGGGATGGGTGCAAATCCACCAAGAGCCGGTAGGCCAGTTAATATGCCTCCGATGTTTCCACCGCCTCCGCCCCCACCTCAAAATAACAACCGACTTGTCAAGAGAGATCAAAGAATTAATGATCGGAATGATAAGTTTGGTCCAGGATTAGAGCAGGGCAAGAATCAGGATATGATGAGTCAGAGTGGTGGACCTGATGATGACATGCAAGGATACAAGGCGCAGCAGGATGATCAGTATGCTGTCAATAACTTAAGGAACGATGATAGCGAAAGCGAGGATGAAGCACCTCGGCGGTCAAGACACGGAGAGGGGAAAAAGAGAAGGCGAAGCTTAGAAGATGCTAACGCAAGCTCTAATCACTAG 2091 0.4945 MEDSEGVLSFDFEGGLDAAPPAAATASAPSAGPLSNQNDSTAAAAAAAVPNGAAAPAPTSGDPGAAGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSAGPPPPVDEVLQKIQHLYSYNYNASNKFFQQRGSNYNQQAEKSQFPQGNNPTNQAVAGKPVPAESGNVQQQQVQQAQQPVNQSQVQSVANGQPNQANKTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESIGHVVGPAVQGRGRGRGMMWPPHMPLARGARPMPGIPGFNPVMMGDGLSYGPVGPDGFGMPDLFGVGPRGFPPYGPRFSGDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPARPHFMGGMGANPPRAGRPVNMPPMFPPPPPPPQNNNRLVKRDQRINDRNDKFGPGLEQGKNQDMMSQSGGPDDDMQGYKAQQDDQYAVNNLRNDDSESEDEAPRRSRHGEGKKRRRSLEDANASSNH 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242516g00002 696 SUPERFAMILY CCCH zinc finger 74 105 IPR036855 GO:0046872
Stsc242516g00002 696 Gene3D ph1033 like domains 241 401 - -
Stsc242516g00002 696 MobiDBLite consensus disorder prediction 193 211 - -
Stsc242516g00002 696 ProSiteProfiles YTH domain profile. 263 398 IPR007275 GO:0003723
Stsc242516g00002 696 MobiDBLite consensus disorder prediction 219 256 - -
Stsc242516g00002 696 Pfam YT521-B-like domain 263 325 IPR007275 GO:0003723
Stsc242516g00002 696 Pfam YT521-B-like domain 342 397 IPR007275 GO:0003723
Stsc242516g00002 696 MobiDBLite consensus disorder prediction 662 690 - -
Stsc242516g00002 696 MobiDBLite consensus disorder prediction 193 256 - -
Stsc242516g00002 696 MobiDBLite consensus disorder prediction 29 44 - -
Stsc242516g00002 696 Gene3D - 70 132 - -
Stsc242516g00002 696 MobiDBLite consensus disorder prediction 20 47 - -
Stsc242516g00002 696 ProSiteProfiles Zinc finger C3H1-type profile. 74 101 IPR000571 GO:0046872
Stsc242516g00002 696 SMART c3hfinal6 130 154 IPR000571 GO:0046872
Stsc242516g00002 696 SMART c3hfinal6 74 100 IPR000571 GO:0046872
Stsc242516g00002 696 SMART c3hfinal6 102 128 IPR000571 GO:0046872
Stsc242516g00002 696 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 69 130 - -
Stsc242516g00002 696 MobiDBLite consensus disorder prediction 415 471 - -
Stsc242516g00002 696 MobiDBLite consensus disorder prediction 437 455 - -
Stsc242516g00002 696 MobiDBLite consensus disorder prediction 609 623 - -
Stsc242516g00002 696 MobiDBLite consensus disorder prediction 585 604 - -
Stsc242516g00002 696 ProSiteProfiles Zinc finger C3H1-type profile. 128 155 IPR000571 GO:0046872
Stsc242516g00002 696 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 37 679 IPR045168 -
Stsc242516g00002 696 MobiDBLite consensus disorder prediction 52 71 - -
Stsc242516g00002 696 MobiDBLite consensus disorder prediction 575 696 - -
Stsc242516g00002 696 CDD YTH 264 398 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242516g00002 Stsc-Chr242516 6530 12666 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc242516g00002 YTH 3.7e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242516g00002 K14404 - gmx:100802826 1111.29