Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc242516g00002 | ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGATGCTGCTCCCCCCGCCGCCGCCACCGCCTCCGCTCCCTCCGCCGGACCTCTCTCCAATCAAAACGATTCCACAGCGGCGGCCGCTGCAGCCGCCGTTCCTAATGGCGCTGCCGCACCTGCGCCCACATCTGGAGATCCCGGAGCTGCCGGTAACGTGCCTGGGCGGCGGAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTAAGGAGCTTGTGTATGAAGGGAGACGCTTGCGGGTTCTTGCACCAGTACGACAAGGCGAGGATGCCGGTGTGCCGGTTCTTTCGGCTTTACGGTGAGTGCCGCGAGCAGGATTGCGTGTACAAGCACACCAACGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCTAATGGGCCTGATTGCCGATACAGGCATGCGAAATCTGCTGGACCTCCACCTCCTGTTGATGAGGTCCTTCAAAAGATCCAGCATTTATATTCTTACAACTACAATGCATCTAACAAATTTTTCCAACAAAGGGGTTCAAACTATAATCAACAAGCTGAAAAATCTCAATTTCCCCAAGGAAATAATCCTACAAACCAAGCTGTTGCTGGAAAACCAGTACCAGCGGAGTCGGGTAATGTTCAGCAGCAACAAGTTCAACAGGCTCAGCAGCCAGTCAACCAAAGCCAAGTGCAAAGTGTTGCAAATGGTCAGCCCAATCAGGCGAATAAAACTGCAACTCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCAGTACAACAAGGAGTATGGGCAACACAAAGGAGCAATGAGTCGAAACTCAACGAGGCTTTTGATTCTGTGGAAAATGTTATACTGATTTTCTCAGTCAACCGAACTCGCCATTTCCAGGGTTGTGCAAAGATGACCTCCAGAATTGGTGGTTCTGTTGCTGGGGGAAACTGGAAATATGCTCATGGAACAGCACATTATGGGCGGAATTTCTCTGTTAAATGGTTGAAGTTATGCGAACTGTCATTCCACAAAACTCGCCATTTGAGGAATCCATACAATGAAAATTTACCAGTGAAGATAAGTAGAGATTGTCAGGAGCTGGAACCCTCTATTGGTGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAGCTTATGGCTATCTCCATTGCAGCAGAGTCTAAACGAGAAGAAGAGAAGGCAAAGGGAGTGAATCCTGACAATGGAGGAGAGAATCCGGATATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAAGAAGAAAGTGACGAAGAGGAAGAGAGCATTGGTCATGTTGTTGGGCCAGCTGTTCAAGGCAGAGGTAGGGGCAGAGGCATGATGTGGCCGCCTCACATGCCTCTTGCACGGGGAGCCAGACCTATGCCTGGAATCCCAGGTTTTAACCCAGTAATGATGGGTGATGGATTATCATATGGGCCTGTTGGACCCGATGGCTTTGGTATGCCAGATCTTTTTGGTGTGGGCCCTCGCGGTTTTCCTCCATATGGTCCTAGGTTCTCTGGTGATTTTGCAGGACCCCCAGCAGCCATGATGTTCCGTGGACGACCCTCCCAACCTGGGATGTTTCCAGGTGGTGGATTTGGGATGATGATGAATCCTGCACGTCCTCACTTTATGGGTGGGATGGGTGCAAATCCACCAAGAGCCGGTAGGCCAGTTAATATGCCTCCGATGTTTCCACCGCCTCCGCCCCCACCTCAAAATAACAACCGACTTGTCAAGAGAGATCAAAGAATTAATGATCGGAATGATAAGTTTGGTCCAGGATTAGAGCAGGGCAAGAATCAGGATATGATGAGTCAGAGTGGTGGACCTGATGATGACATGCAAGGATACAAGGCGCAGCAGGATGATCAGTATGCTGTCAATAACTTAAGGAACGATGATAGCGAAAGCGAGGATGAAGCACCTCGGCGGTCAAGACACGGAGAGGGGAAAAAGAGAAGGCGAAGCTTAGAAGATGCTAACGCAAGCTCTAATCACTAG | 2091 | 0.4945 | MEDSEGVLSFDFEGGLDAAPPAAATASAPSAGPLSNQNDSTAAAAAAAVPNGAAAPAPTSGDPGAAGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSAGPPPPVDEVLQKIQHLYSYNYNASNKFFQQRGSNYNQQAEKSQFPQGNNPTNQAVAGKPVPAESGNVQQQQVQQAQQPVNQSQVQSVANGQPNQANKTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESIGHVVGPAVQGRGRGRGMMWPPHMPLARGARPMPGIPGFNPVMMGDGLSYGPVGPDGFGMPDLFGVGPRGFPPYGPRFSGDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPARPHFMGGMGANPPRAGRPVNMPPMFPPPPPPPQNNNRLVKRDQRINDRNDKFGPGLEQGKNQDMMSQSGGPDDDMQGYKAQQDDQYAVNNLRNDDSESEDEAPRRSRHGEGKKRRRSLEDANASSNH | 696 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc242516g00002 | 696 | SUPERFAMILY | CCCH zinc finger | 74 | 105 | IPR036855 | GO:0046872 | |
Stsc242516g00002 | 696 | Gene3D | ph1033 like domains | 241 | 401 | - | - | |
Stsc242516g00002 | 696 | MobiDBLite | consensus disorder prediction | 193 | 211 | - | - | |
Stsc242516g00002 | 696 | ProSiteProfiles | YTH domain profile. | 263 | 398 | IPR007275 | GO:0003723 | |
Stsc242516g00002 | 696 | MobiDBLite | consensus disorder prediction | 219 | 256 | - | - | |
Stsc242516g00002 | 696 | Pfam | YT521-B-like domain | 263 | 325 | IPR007275 | GO:0003723 | |
Stsc242516g00002 | 696 | Pfam | YT521-B-like domain | 342 | 397 | IPR007275 | GO:0003723 | |
Stsc242516g00002 | 696 | MobiDBLite | consensus disorder prediction | 662 | 690 | - | - | |
Stsc242516g00002 | 696 | MobiDBLite | consensus disorder prediction | 193 | 256 | - | - | |
Stsc242516g00002 | 696 | MobiDBLite | consensus disorder prediction | 29 | 44 | - | - | |
Stsc242516g00002 | 696 | Gene3D | - | 70 | 132 | - | - | |
Stsc242516g00002 | 696 | MobiDBLite | consensus disorder prediction | 20 | 47 | - | - | |
Stsc242516g00002 | 696 | ProSiteProfiles | Zinc finger C3H1-type profile. | 74 | 101 | IPR000571 | GO:0046872 | |
Stsc242516g00002 | 696 | SMART | c3hfinal6 | 130 | 154 | IPR000571 | GO:0046872 | |
Stsc242516g00002 | 696 | SMART | c3hfinal6 | 74 | 100 | IPR000571 | GO:0046872 | |
Stsc242516g00002 | 696 | SMART | c3hfinal6 | 102 | 128 | IPR000571 | GO:0046872 | |
Stsc242516g00002 | 696 | FunFam | Cleavage and polyadenylation specificity factor 30 kDa subunit | 69 | 130 | - | - | |
Stsc242516g00002 | 696 | MobiDBLite | consensus disorder prediction | 415 | 471 | - | - | |
Stsc242516g00002 | 696 | MobiDBLite | consensus disorder prediction | 437 | 455 | - | - | |
Stsc242516g00002 | 696 | MobiDBLite | consensus disorder prediction | 609 | 623 | - | - | |
Stsc242516g00002 | 696 | MobiDBLite | consensus disorder prediction | 585 | 604 | - | - | |
Stsc242516g00002 | 696 | ProSiteProfiles | Zinc finger C3H1-type profile. | 128 | 155 | IPR000571 | GO:0046872 | |
Stsc242516g00002 | 696 | PANTHER | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING | 37 | 679 | IPR045168 | - | |
Stsc242516g00002 | 696 | MobiDBLite | consensus disorder prediction | 52 | 71 | - | - | |
Stsc242516g00002 | 696 | MobiDBLite | consensus disorder prediction | 575 | 696 | - | - | |
Stsc242516g00002 | 696 | CDD | YTH | 264 | 398 | IPR007275 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc242516g00002 | Stsc-Chr242516 | 6530 | 12666 | Dispersed/Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Stsc242516g00002 | YTH | 3.7e-45 | CL0178 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc242516g00002 | K14404 | - | gmx:100802826 | 1111.29 |