Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242499g00001 ATGGAATCGATTCCTTACACAATCCCTTCTTCTTCCTCTTCTTCTTCTAAGCTCCAATCACTTCTTTTTTACAAAACACCCACCCCAACTCGATCCTCCAACCTCCTACCTCTTCGCCCTCCCTTACTTCCAATCAAACCCTTCTATTATTATTCCACCAAATCCCTCACTCTTCGTCACCACCGCCTCCGCTACCTCACTCACTCCAACGCTAACCACCACAGCGATCATGACCACCACGACCACGACCACGGCCACCACCACCACCACCACCACCACGGGCATCATGCCCTCGACAGCGCTAACCTCACTGGACCACAACGAGCGATCATCGCGTTCGCAAAAGCCACGAGGTGGATGGACTTGGCCGATTTCTTAAGAGAGCACTTGCATCTTTGCTGCTTCTCCACAGCTTTGTTCGTAGCAGCTGCCATTTGCCCTCACACTTTGCCAAAGCCTCTCGTTAAGCGCTTCCAACACTCCCTCATCATCCTTGCTTTTCCTTTGGTTGGGGTTTCGGCTTCGCTGGATGCTTTAATTGAACTTAGCAGTGGAAAAGTGAACATCCATGTACTAATGGCGATGGCTGCTTTTGCGTCTGTTTTTATGGGAAACTCTTTGGAAGGAGGGTTGCTTCTTGCCATGTTCAATCTCGCGCATATAGCTGAGGAGTACTTCACGGGGCGGTCCATGATTGATGTCAAAGAGTTGAAGGAGAATCATCCTGAGTTTGCGCTTGTTCTTGACACCAGTGGTGATAAGCTTCCTAATACATTCGACTTGGCATACAAGAGTGTTCCTGTGCATGATGTAACTGTAGGATCATATATCCTTGTTGGTGCCGGTGAGTCTGTGCCTGTAGATTGCGAAGTTTTCCAAGGCAGCGCTACAATTACCATTGAGCACTTGACAGGGGAAATCAAACCATTGGAGGCCAAAGTTGGAGACAGAATACCTGGTGGTGCAAGGAACTTAGATGGGAGGATAATTGTAAAGGCAACAAAGACATGGAACGAATCAACCCTAAGCCGAATTGTGCAATTGACAGAAGAAGCACAGTTGAATAAACCAAAACTTCAAAGGTGGCTGGATGAATTTGGTGAACATTACAGCAAAGTAGTTGTTGTATTATCAGTTGCAATTGCTGTTATTGGGCCAATTTTATTTAAGTGGCCTTTCATTAGCACACCAGCTTGCAGAGGATCAGTTTACAGAGCCCTAGGGCTCATGGTTGCAGCATCTCCATGTGCTTTGGCTGTGGCCCCATTAGCATATGCAACAGCAATTAGCTCCTGCGCAAGAAAGGGGATATTACTCAAAGGTGGACATGTGCTAGATGCTCTTGCTTCTTGTCATACTATTGCATTTGACAAAACAGGAACATTAACCACAGGCGGACTTCTATTCAAGGCAATTGAGCCCATTTATGGTCATAATGTCAGAAACAATGAATCAAACATTTCTTCCTGTTGCATCCCTACCTGTGAGAAAGAAGCACTTGCTGTTGCTGCAGCTATGGAAAAGGGTACTACTCACCCCATTGGAAGGGCTGTGGTTGACCACAGTGAAGGCAAAGACCTCCCATCTGTTTCTGTTGAAAGTTTTGAGTACTTCCCTGGACGAGGCCTTATTGCTACTGTTAACAGTGTTGAGTCAGGAACTGGAAGTGCTAAGCTATTGCAAGCATCGCTTGGGTCTGTAGATTTCATCACATCATTTTGTCAATCTGAAGAGGAGTCAGACAAGATCAAGGAAGCTGTTAATACGTCTTCATATGGAAGTGAATTTGTTCATGCTGCTCTTTCGGTTAATAAGAAGGTGACACTGATTCACCTCGAAGATAGGCCTCGTCCAGGGGTATTTAATGTTATTCAAGAATTGCAGAATGAAGCAAAGTTACGGGTGATGATGTTAACTGGTGATCACGAGTCTAGTGCAAGGAGGGTTGCAAATGCTGTGGGTATCAGTGAGTTTCATTGCAACCTGAAGCCTGAAGATAAATTGAGTCATGTAAAAGACATCTCAAGAGATACAGGCGGAGGCTTAATTATGGTTGGTGAAGGAATCAATGATGCCCCTGCACTTGCTGCTGCAACTGTAGGGATTGTGCTTGCTCACCGTGCTAGTGCAACTGCTATAGCTGTCGCTGATGTGTTATTGCTTCGCGAAAATATTTCTGCAGTGCCATTTTGTATTGCTAAGTCTCGCCAAACAACTTCACTGATTAAACAAAATGTGGCCCTGGCATTGTTCTGCATTACCATGGCTTCTCTTCCATCAGTTTTGGGATTTCTTCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCCTGCTTGTTTGTCTCAATTCCATTCGGGCCTTAAATGAACCGTCTTGGTCGTGGAAGAAGGATTTGTTACAATTGATTGGCGAGGTTAAATCTAGGCTACTGCCTCTCCGGACAAATATTAAGGGCTCAAGTAACATTAAAACGGCGAGTTTGTAA 2490 0.4534 MESIPYTIPSSSSSSSKLQSLLFYKTPTPTRSSNLLPLRPPLLPIKPFYYYSTKSLTLRHHRLRYLTHSNANHHSDHDHHDHDHGHHHHHHHHGHHALDSANLTGPQRAIIAFAKATRWMDLADFLREHLHLCCFSTALFVAAAICPHTLPKPLVKRFQHSLIILAFPLVGVSASLDALIELSSGKVNIHVLMAMAAFASVFMGNSLEGGLLLAMFNLAHIAEEYFTGRSMIDVKELKENHPEFALVLDTSGDKLPNTFDLAYKSVPVHDVTVGSYILVGAGESVPVDCEVFQGSATITIEHLTGEIKPLEAKVGDRIPGGARNLDGRIIVKATKTWNESTLSRIVQLTEEAQLNKPKLQRWLDEFGEHYSKVVVVLSVAIAVIGPILFKWPFISTPACRGSVYRALGLMVAASPCALAVAPLAYATAISSCARKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLLFKAIEPIYGHNVRNNESNISSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVESFEYFPGRGLIATVNSVESGTGSAKLLQASLGSVDFITSFCQSEEESDKIKEAVNTSSYGSEFVHAALSVNKKVTLIHLEDRPRPGVFNVIQELQNEAKLRVMMLTGDHESSARRVANAVGISEFHCNLKPEDKLSHVKDISRDTGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALFCITMASLPSVLGFLPLWLTVLLHEGGTLLVCLNSIRALNEPSWSWKKDLLQLIGEVKSRLLPLRTNIKGSSNIKTASL 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242499g00001 829 NCBIfam HAD-IC family P-type ATPase 584 765 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc242499g00001 829 NCBIfam HAD-IC family P-type ATPase 263 477 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc242499g00001 829 Gene3D - 448 736 IPR023214 -
Stsc242499g00001 829 Pfam E1-E2 ATPase 263 435 - -
Stsc242499g00001 829 SUPERFAMILY Calcium ATPase, transmembrane domain M 191 758 IPR023298 -
Stsc242499g00001 829 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 61 827 - -
Stsc242499g00001 829 SFLD C1.7: P-type atpase like 437 738 - -
Stsc242499g00001 829 SUPERFAMILY HAD-like 453 785 IPR036412 -
Stsc242499g00001 829 Gene3D - 229 353 - -
Stsc242499g00001 829 SFLD p-type atpase 437 738 IPR044492 -
Stsc242499g00001 829 CDD P-type_ATPase_HM 133 787 - -
Stsc242499g00001 829 NCBIfam heavy metal translocating P-type ATPase 189 787 IPR027256 GO:0006812|GO:0016020|GO:0019829
Stsc242499g00001 829 Gene3D - 466 616 IPR023299 GO:0000166
Stsc242499g00001 829 PRINTS P-type cation-transporting ATPase superfamily signature 631 641 - -
Stsc242499g00001 829 PRINTS P-type cation-transporting ATPase superfamily signature 709 721 - -
Stsc242499g00001 829 PRINTS P-type cation-transporting ATPase superfamily signature 608 619 - -
Stsc242499g00001 829 PRINTS P-type cation-transporting ATPase superfamily signature 99 113 - -
Stsc242499g00001 829 PRINTS P-type cation-transporting ATPase superfamily signature 685 704 - -
Stsc242499g00001 829 ProSitePatterns E1-E2 ATPases phosphorylation site. 457 463 IPR018303 -
Stsc242499g00001 829 Pfam haloacid dehalogenase-like hydrolase 453 698 - -
Stsc242499g00001 829 MobiDBLite consensus disorder prediction 71 99 - -
Stsc242499g00001 829 SUPERFAMILY Calcium ATPase, transduction domain A 263 348 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242499g00001 Stsc-Chr242499 2377 12077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242499g00001 9 810 Primary Pumps ATPases AT4G37270 70.596 0.0 1093
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242499g00001 K01534 - gmx:100776309 1303.89