Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242498g00003 ATGTCACCGGTTGGATTACCACCTGGGTTTAGGTTTCATCCAACAGATGAAGAGCTTGTTAATTATTATCTAAAGAGGAAGATCAATGGCCAAGAAATTGAACTTGATATCATTCCTGAGGTTGATCTCTACAAATGTGAACCATGGGAATTAGCAGAGAAATCATTTTTGCCAAGTAGAGATCCAGAGTGGTATTTCTTTGGACCAAGGGACAGAAAATACCCTAACGGTTTTAGAACGAATAGAGCAACGAGAGCAGGGTACTGGAAATCAACAGGTAAAGACAGAAGAGTTTCATGTCAAAGTAGACCAATTGGTATGAAAAAAACTTTGGTTTATTACAGAGGAAGGGCTCCTCAAGGAATCAGAACTGATTGGGTTATGCACGAATATCGCCTTGATGACAAAGATTCTGAAGATACGTCTGGTCTACAGGATACTTATGCATTGTGCCGAGTGTTCAAGAAAAATGGAATATGTTCGGATGTTGAAGAGCAAGTAGGGCAATGTAGTAACATGTCATCACTAATTGAGAGCTCTCAAACCATAATCAATAACAATAATAATGAGTATTGTGAAACCATGTCACCAGAGATGGCAGGGGTTTCATCTTCATGTTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATCACAGAAGATGCATGGTACTCTTCTAATCCACCAAATATGGTTGGTGCTTCTTCTGCTGCTGCTGAACAAGTTTCACATATTACATTTACAAACTAA 756 0.3902 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKDSEDTSGLQDTYALCRVFKKNGICSDVEEQVGQCSNMSSLIESSQTIINNNNNEYCETMSPEMAGVSSSCLEEEDKDDSWMQFITEDAWYSSNPPNMVGASSAAAEQVSHITFTN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242498g00003 251 FunFam Nac domain-containing protein 86 15 159 - -
Stsc242498g00003 251 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Stsc242498g00003 251 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 198 - -
Stsc242498g00003 251 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Stsc242498g00003 251 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Stsc242498g00003 251 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242498g00003 Stsc-Chr242498 9351 13760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242498g00003 1 235 NAC Transcription Factor Family AT3G17730 78.423 3.89e-135 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc242498g00003 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242498g00003 - - ahf:112750829 491.115