Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242493g00003 ATGGGGTATTTGTGTTGTTGCAACTTTGATTGGAATGTAGCAGCGGCCATGGTTCTCTTTCCATCTCTTGTCAATGGATTGGCAAGAACAATTGCATCAAAGAAAGAGAAAGGTTGTGCAAACGATGATGATGAGGATGAAAAGAAAGCAGTGAAAGCACTGGCAAAGGAAGCAAGGAAGAATGGATTGTTATTGAGTTCATCTGGAACTGTTAAGTCTCCCAAGGCCAACAACTTTGCCTCTGTTTTCACAAAGAAGGGCCAGAAAGGTGTCAACCAAGATTGCCTTATTGTTTGGGAGGAATTTGGTTGGCAAGAAGACATGATATTGTGTGGAGTTTTTGATGGACATGGGCCTTGGGGACACTATGTATCCAAAAGTGTGAGGAAACTTGTTCCTGCTTCTTTGCTAAGCAACTTGAAGGGAAATCTTGCTGCCACATCACTTGATGACCTGAATTACAAGATGGAAGCAGATGGGAAGAATCACCATGACATATGGAAGCAGGCATGCGTAAAAACTTGTGCTGCTGTTGATCATGATCTAAAGCTCAATACCGGGATTGATTCCTTTCAAAGTGGTACTACAGCTTTGACAGTTATCAAACAGGGTGAAGATCTGATTATATCAAACTTAGGTGATTCAAGAGCAGTATTGGCAACAACTTCAGATTGTGGCACACTAAGTGCCCTTCAGCTTACAACTGACATGAAGCCAAATTTACCAAAGGAGGCAGAGAGGATAATGGAATCAAGAGGGAGGGTGTTTTGTCTAGAAGATGAGCCAGGAGTGTATAGGGTGTGGATGCCAAATGGTAAAACACCAGGACTTGCAATATCAAGAGCATTGGGTGATTATTGTGTCAAGGACTTTGGACTAATCTCTGTCCCTGAGGTCACTCAAAGGAAGCTTAACTCTAGAGATCAATTTCTTATCTTGGCTAGTGATGGGGTATGGGATGTAATCTCGAACCAAGAAGCAGTGAAGATAGTTGGTTCAAGTGAAGAGAAAGGAAAAGCCGCTGAGAGGCTTGTGAAATGCGCAACGCATGAATGGAAGAGGAAGAGAAGAGGCATTGCCATTGATGACATATCTGCTATCTGCCTCTTCTTTCAGGCTCATAACATTCTCACATCACAATCATATGCATAG 1152 0.4253 MGYLCCCNFDWNVAAAMVLFPSLVNGLARTIASKKEKGCANDDDEDEKKAVKALAKEARKNGLLLSSSGTVKSPKANNFASVFTKKGQKGVNQDCLIVWEEFGWQEDMILCGVFDGHGPWGHYVSKSVRKLVPASLLSNLKGNLAATSLDDLNYKMEADGKNHHDIWKQACVKTCAAVDHDLKLNTGIDSFQSGTTALTVIKQGEDLIISNLGDSRAVLATTSDCGTLSALQLTTDMKPNLPKEAERIMESRGRVFCLEDEPGVYRVWMPNGKTPGLAISRALGDYCVKDFGLISVPEVTQRKLNSRDQFLILASDGVWDVISNQEAVKIVGSSEEKGKAAERLVKCATHEWKRKRRGIAIDDISAICLFFQAHNILTSQSYA 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242493g00003 383 SMART PP2C_4 70 369 IPR001932 -
Stsc242493g00003 383 CDD PP2Cc 78 371 IPR001932 -
Stsc242493g00003 383 Gene3D - 67 374 IPR036457 -
Stsc242493g00003 383 SUPERFAMILY PP2C-like 73 372 IPR036457 -
Stsc242493g00003 383 Coils Coil 41 61 - -
Stsc242493g00003 383 ProSiteProfiles PPM-type phosphatase domain profile. 79 371 IPR001932 -
Stsc242493g00003 383 Pfam Protein phosphatase 2C 157 346 IPR001932 -
Stsc242493g00003 383 PANTHER PROTEIN PHOSPHATASE 58 369 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242493g00003 Stsc-Chr242493 16633 19953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242493g00003 17 372 PP2C-type Phosphatase Gene Family AT3G05640 58.146 5.81e-153 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242493g00003 - - gmx:100814087 523.857