Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242493g00002 ATGGTTCTCTTTCCATCTCTTGTCAATGGATTGGCAAGAACAATTGCATCAAAGAAAGAGAAAGGTTGTGCAAACGATGATGATGAGGATGAAAAGAAAGCAGTGAAAGCACTGGCAAAGGAAGCAAGGAAGAATGGATTGTTATTGAGTTCATCTGGAACTGTTAAGTCTCCCAAGGCCAACAACTTTGCCTCTGTTTTCACAAAGAAGGGCCAGAAAGGTGTCAACCAAGATTGCCTTATTGTTTGGGAGGAATTTGGTTGGCAAGAAGACATGATATTGTGTGGAGTTTTTGATGGACATGGGCCTTGGGGACACTATGTATCCAAAAGTGTGAGGAAACTTGTTCCTGCTTCTTTGCTAAGCAACTTGAAGGGAAATCTTGCTGCCACATCACTTGATGACCTGAATTACAAGATGGAAGCAGATGGGAAGAATCACCATGACATATGGAAGCAGGCATGCGTAAAAACTTGTGCTGCTGTTGATCATGATCTAAAGCTCAATACCGGGATTGATTCCTTTCAAAGTGGTACTACAGCTTTGACAGTTATCAAACAGGGTGAAGATCTGATTATATCAAACTTAGGTGATTCAAGAGCAGTATTGGCAACAACTTCAGATTGTGGCACACTAAGTGCCCTTCAGCTTACAACTGACATGAAGCCAAATTTACCAAAGGAGGCAGAGAGGATAATGGAATCAAGAGGGAGGGTGTTTTGTCTAGAAGATGAGCCAGGAGTGTATAGGGTGTGGATGCCAAATGGTAAAACACCAGGACTTGCAATATCAAGAGCATTGGGTGATTATTGTGTCAAGGACTTTGGACTAATCTCTGTCCCTGAGGTCACTCAAAGGAAGCTTAACTCTAGAGATCAATTTCTTATCTTGGCTAGTGATGGGGTATGGGATGTAATCTCGAACCAAGAAGCAGTGAAGATAGTTGGTTCAAGTGAAGAGAAAGGAAAAGCCGCTGAGAGGCTTGTGAAATGCGCAACGCATGAATGGAAGAGGAAGAGAAGAGGCATTGCCATTGATGACATATCTGCTATCTGCCTCTTCTTTCAGGCTCATAACATTCTCACATCACAATCATATGCATAG 1104 0.4239 MVLFPSLVNGLARTIASKKEKGCANDDDEDEKKAVKALAKEARKNGLLLSSSGTVKSPKANNFASVFTKKGQKGVNQDCLIVWEEFGWQEDMILCGVFDGHGPWGHYVSKSVRKLVPASLLSNLKGNLAATSLDDLNYKMEADGKNHHDIWKQACVKTCAAVDHDLKLNTGIDSFQSGTTALTVIKQGEDLIISNLGDSRAVLATTSDCGTLSALQLTTDMKPNLPKEAERIMESRGRVFCLEDEPGVYRVWMPNGKTPGLAISRALGDYCVKDFGLISVPEVTQRKLNSRDQFLILASDGVWDVISNQEAVKIVGSSEEKGKAAERLVKCATHEWKRKRRGIAIDDISAICLFFQAHNILTSQSYA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242493g00002 367 Gene3D - 51 358 IPR036457 -
Stsc242493g00002 367 SMART PP2C_4 54 353 IPR001932 -
Stsc242493g00002 367 CDD PP2Cc 62 355 IPR001932 -
Stsc242493g00002 367 Coils Coil 25 45 - -
Stsc242493g00002 367 SUPERFAMILY PP2C-like 57 356 IPR036457 -
Stsc242493g00002 367 ProSiteProfiles PPM-type phosphatase domain profile. 63 355 IPR001932 -
Stsc242493g00002 367 Pfam Protein phosphatase 2C 139 330 IPR001932 -
Stsc242493g00002 367 PANTHER PROTEIN PHOSPHATASE 43 353 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242493g00002 Stsc-Chr242493 16633 19953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242493g00002 1 356 PP2C-type Phosphatase Gene Family AT3G05640 58.146 9.19e-154 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242493g00002 - - gmx:100814087 523.857