Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242493g00001 ATGGGTGTTATCCAAAATATCCTCAAAGTTATAGAGCAAAGAGTGCTCATGGAGGGCGCAGCGTCGATGCTAGGCGGCGGGCCCAGAGCTCAGGCGGTCCGTCGCGCCATGCTTTTGAACCCACCACCGCTAATAGCGGCGGTCTTTCCTTGGGATCGCGCAGCGCGGACAGAATCGACGGCTGACAGACGCGATTGGGGCGGTGGCATGGTGCAGTGGCGAAGTCTCTCTCTCTTGAGTTTCGGGCACGACGGGAAGGAAGGGAAGAGGCTCCCGTCGAAAGCTTTGAGTCCCACAGCGATGTTGAGAGGAACACCGCCAGCAATGAACCAAGAAAGGGATGGTTACGGTTATGGCTACGATTACGTTGGTGGCAACATATGGGAAATGGAGGAAGAACAAAGGCTCGGTGGTGCAAATCTCAGTCACGGCGGCAGGAGCAAGACAATAGAAGAAGAGCTTCGGATCCGAAGCAACCAACGACGCCGTTTCAGCTTCTTTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACAATTCCCATTCCGATCCCTCATCGCCGCCGATTATATTTTTCCGATGGCGACTGAGCAGTTAATGTCCGACGGCGGCGCACACCGTTACTTCCCTATGAAATCGGAGCAGCCGCCGTCTCCTCCGGCGGCGGCGGAGGAGATGTCGTCTGTTCCGTCTTTCCGACATGGAGGCTCCGGCGAGGCCACTCGGATTTTCGATGAACTTCCGAAGGCCACCATCGTCTCCGTCTCTCGCCCTGATGCCGGCGACATAAGCCCTATGCAGCTCTCTTACACCATTCGGTTTCAGTACAAACAGTTCAAGTGGGAGCTAGTGAAGAAAGCTTCTCAAGTATTTTATTTGCATTTTGCATTAAAGAAGCGTGCGTTTTTTGAGGAAATTCATGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGAACACACTACTATGGTGCATGATGACGATGAAGCTGATGATGAAACATTTGCATCACATGCTGATGAATATGCAAAAAACAGAGATGTTCCATCTATTGCGGCTCTACCGATTATACGACCAGCCTTAGGTAGGCAGCAGTCTGTGTCAGACAGGGCAAAGAGTGCAATGCAAGGATATCTGAATCACTTTTTGGGAAATATCAGTATTGTTAACTCTCCAGAGGGGTTGATTGTGTCAGTCATAACAACTTACAATATTATTGTATGCAATGAGGCCTTGATGGCAAAGCTTACAAATGTCTGCAAATTTTTAGAGGTATCAAAGCTATCTTTTTTGCCTGAATATGGACCTAAACTGAAGGAAGATTATGTAATGGTGAAACATCTGCCCAAAATTATAAAGGATGATGATTCCAGAAAGTGTTGTACTTCTAGCTGTTTTAGTTGTTGCAATGACAACTGGCAAAAGGTATGGGCTGTATTGAAACCTGGATTCTTGGCATTGCTGGCAGATCCTTTTGATATACAGCCCTTAGACATTATTGTCTTTGATGTGCTACCTCCATCCGATGGGAATGGGGATGGTCGTTTGTCACTGGCTAGTGAAATAAAGGAACGAAATCCTTTACGGCATTCATTCAAGGTGACTTGTGGGATCCGGAGCATTAGAATTAGAGGGAAAAGTAGCAGTAAAGTTAAAGATTGGGTAGCAGCAATTAATGATGCTGGACTTAGGCCTCCTGAAGGCTGGTGTCATCCTCACCGCTATGGGTCTTTTGCTCCTCCAAGAGGCTTGATTGAAGATGGTAGTCAAGCCCAGTGGTTCGTGGATGGGAAAGCAGCATTTGATGCAATTGCTTCTTCAATTGAGGATGCTAGATCAGAGATATTCATCTGTGGATGGTGGGTGTGCCCTGAACTGTATCTCAGGCGACCTTTTGACATTCATGCTTCATCAAGGCTAGATAATTTGTTGGAAGCAAAAGCTAAGCAAGGGGTTCAGATCTACATTCTTCTGTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGTGTTTATAGCAAGAGAAAGCTTCTCAACATTCATGAGAACGTGAGGGTACTGCGCTATCCGGATCACTTTTCTTCTGGTGTTTATCTGTGGTCACACCATGAAAAACTGGTCATTGTTGATAACCATATTTGCTTCATTGGAGGACTGGATTTGTGCTTTGGTCGTTATGACTCATCTGAGCATAAAGTGGGGGATTGTCCTCCTCTAATCTGGCCTGGAAAGGACTTTTATAACCCTAGGGAATCTGAACCTAATTCATGGGAAGATACAATGAAAGATGAATTGGATCGTAGAAATTATCCTCGTATGCCTTGGCATGATGTTCATTGTGCCCTTTGGGGGCCACCTTGTCGTGACATTGCTCGGCACTTTGTTCAAAGATGGAATTATGCAAAGAGGAATAAAGCTCCATATGAGCAAGCAATACCTTTACTTATGCCTCAGCATCATATGGTTATTCCACATTACCTGGGAAGAAGCACTGAGATGGAAATTGAAAATAATAATGCCGACAATCATAGAGTCATCAAGAGAGAAGATTCATTTTCCTCATTATCCCAAGAACAAGATGTTCCTCTACTTTTGACTCATGATGAGTCTGAAGAAGACCCCAAATTGAACGGGCTAAGCTCATTCATTCATCACCTTGATAAGCCGACAAAGGTTGGTAGTGGTCTTCCTTTCTCTTTCCGGAAGGTGAAAATTGAAGCTCTTGGTCAAGACACCCCAATGAAGGACTTTGTAGATGATCTTGGATATATGCATTATGATGAGAAAAAATCTCTGGATAGATTGCCTCACGCTGAGCAACAAAATACTGGTCCAGAATGGTGGGAAACCCAAGAGCGGAGTGATCAGGGAGATTTTGCAGATGAATCAGGGCAAGTTGGCCCTCGGGTTTCCTGCCGTTGTCAGGTTGTTAGGAGCGTTAGTCAATGGTCTGCTGGAACAAGTCAAACGGAAGAGAGCATACACAATGCCTATATTTCTCTTATTGAGAAAGCAGAATATTTCATCTACATTGAGAATCAATTTTTTATCTCAGGTCTTTCTGGAGATGAAATGATTCGAAACCGTGTTCTGGAAGCTTTATATCGACGGATTATGCTAGCATACAATGAGAATAAATCCTTTAGGGTTATCATTGTCATACCACTCCTACCTGGCTTCCAGGGCGGTCTTGATGATAGTGGTGCAGCATCTGTGAGAGCAATAATGCATTGGCAGTATCGAACCATTTGTAGAGGCCAAAATTCTATATTACATAATCTTTATGAACTTCTTGGTTCAAAAATACATGACTACATCTCCTTTTTCGGCTTGAGGTCTTACGGTAGACTTTTTGATGGTGGTCCTGTAGCAACCAGCCAGGTGTATGTTCACAGTAAAATCATGATTGTTGATGATCGCATAAGTTTGATTGGATCTGCTAATATTAATGATAGGAGCCTACTTGGATCTAGAGATTCTGAGATTGGAGTAGTTATAGAAGACAGAGAGTTAATTGGTTCTTATATGGATGGAAAGCCTTGGAAAGCAGGAAAGTTCTCCTTGACTCTCCGTTTGTCATTATGGTCTGAGCACTTGGGTTTACCAGCAGGAGAGGTCAATCAAATAATGGACCCAATTATTGAATCATGCTACAAAGATATTTGGATGGCAACAGCAAAGACAAATACTGCAATTTACCAGGATGTCTTTTGTTGTGTACCCAATGATCTAATACACACCAGACTTGCTTTTAGACAGAGTGTAGCCTTTTGGAAAGAAAGAGTTGGTCACACAACCATTGATTTAGGAATAGCGCCACAAAAATTAGAATCCTATCATAATGGAGATGTCAAGAACACCGATCCATTGGAGAGATTAGCATCAGTGAGGGGTCATCTTGTTTCTTTTCCCTTGGAGTTCATGTGTCAAGAAAGTCTAAGACCTGGTTTCAGTGAAAGTGAATATTACGCTGCTGCTCAAGTTTTCCACTGA 4008 0.4396 MGVIQNILKVIEQRVLMEGAASMLGGGPRAQAVRRAMLLNPPPLIAAVFPWDRAARTESTADRRDWGGGMVQWRSLSLLSFGHDGKEGKRLPSKALSPTAMLRGTPPAMNQERDGYGYGYDYVGGNIWEMEEEQRLGGANLSHGGRSKTIEEELRIRSNQRRRFSFFPSSSSSSSSSSQFPFRSLIAADYIFPMATEQLMSDGGAHRYFPMKSEQPPSPPAAAEEMSSVPSFRHGGSGEATRIFDELPKATIVSVSRPDAGDISPMQLSYTIRFQYKQFKWELVKKASQVFYLHFALKKRAFFEEIHEKQEQVKEWLQNLGIGEHTTMVHDDDEADDETFASHADEYAKNRDVPSIAALPIIRPALGRQQSVSDRAKSAMQGYLNHFLGNISIVNSPEGLIVSVITTYNIIVCNEALMAKLTNVCKFLEVSKLSFLPEYGPKLKEDYVMVKHLPKIIKDDDSRKCCTSSCFSCCNDNWQKVWAVLKPGFLALLADPFDIQPLDIIVFDVLPPSDGNGDGRLSLASEIKERNPLRHSFKVTCGIRSIRIRGKSSSKVKDWVAAINDAGLRPPEGWCHPHRYGSFAPPRGLIEDGSQAQWFVDGKAAFDAIASSIEDARSEIFICGWWVCPELYLRRPFDIHASSRLDNLLEAKAKQGVQIYILLYKEVALALKINSVYSKRKLLNIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDNHICFIGGLDLCFGRYDSSEHKVGDCPPLIWPGKDFYNPRESEPNSWEDTMKDELDRRNYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPYEQAIPLLMPQHHMVIPHYLGRSTEMEIENNNADNHRVIKREDSFSSLSQEQDVPLLLTHDESEEDPKLNGLSSFIHHLDKPTKVGSGLPFSFRKVKIEALGQDTPMKDFVDDLGYMHYDEKKSLDRLPHAEQQNTGPEWWETQERSDQGDFADESGQVGPRVSCRCQVVRSVSQWSAGTSQTEESIHNAYISLIEKAEYFIYIENQFFISGLSGDEMIRNRVLEALYRRIMLAYNENKSFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYELLGSKIHDYISFFGLRSYGRLFDGGPVATSQVYVHSKIMIVDDRISLIGSANINDRSLLGSRDSEIGVVIEDRELIGSYMDGKPWKAGKFSLTLRLSLWSEHLGLPAGEVNQIMDPIIESCYKDIWMATAKTNTAIYQDVFCCVPNDLIHTRLAFRQSVAFWKERVGHTTIDLGIAPQKLESYHNGDVKNTDPLERLASVRGHLVSFPLEFMCQESLRPGFSESEYYAAAQVFH 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242493g00001 1335 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1131 1158 IPR001736 GO:0003824
Stsc242493g00001 1335 Gene3D Endonuclease Chain A 935 1191 - -
Stsc242493g00001 1335 Pfam Phospholipase D Active site motif 703 730 IPR001736 GO:0003824
Stsc242493g00001 1335 CDD PLDc_vPLD1_2_yPLD_like_1 596 741 - -
Stsc242493g00001 1335 Gene3D - 469 568 IPR011993 -
Stsc242493g00001 1335 Gene3D Endonuclease Chain A 589 827 - -
Stsc242493g00001 1335 CDD PH_PLD 424 566 - -
Stsc242493g00001 1335 SUPERFAMILY PH domain-like 475 566 - -
Stsc242493g00001 1335 SMART pld_4 1131 1158 IPR001736 GO:0003824
Stsc242493g00001 1335 SMART pld_4 703 730 IPR001736 GO:0003824
Stsc242493g00001 1335 SUPERFAMILY Phospholipase D/nuclease 972 1181 - -
Stsc242493g00001 1335 Pfam PLD-like domain 1128 1178 IPR025202 -
Stsc242493g00001 1335 FunFam Phospholipase 965 1185 - -
Stsc242493g00001 1335 PANTHER PHOSPHOLIPASE D 419 1323 IPR015679 -
Stsc242493g00001 1335 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 703 730 IPR001736 GO:0003824
Stsc242493g00001 1335 SMART PH_update 442 570 IPR001849 -
Stsc242493g00001 1335 MobiDBLite consensus disorder prediction 210 235 - -
Stsc242493g00001 1335 MobiDBLite consensus disorder prediction 937 971 - -
Stsc242493g00001 1335 CDD PLDc_vPLD1_2_yPLD_like_2 991 1175 - -
Stsc242493g00001 1335 SUPERFAMILY Phospholipase D/nuclease 558 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242493g00001 Stsc-Chr242493 393 15234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242493g00001 194 1215 Phospholipase D Gene Family (Wang group) AT3G16785 71.568 0.0 1394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242493g00001 K01115 - gmx:100780514 1953.33