Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242492g00004 ATGGTGTCTGAGTTGTTGCCTCGTGACAAGGTGTTCTTTTCTGAAGATGGGACCCTCTTTGATGCTGCTTGCACTCTTTGTGGTTTTGGGTTTCCGTGGGAGAAGTTGGGGGTTGTTGAAGGCCAAGTGAGGGTTGGAAGAATTGACGGACTCTTAAGCGATCTGAAGTTGATATTTTTGGATTTTGAGTTGGGAAGGTTTGTTAAGGGAGATGTGGATTCTTGGCATGAGATGTGTAGAAAATTAAGAGTGTTTTATGATTTAGATAGTAGGAAAGGGGTGTTAGGCGAACTAATCGGAAGGAATAAAAGTATATTTGTCGAACATAGAGAAGAAGAGTTAGTTAATAAAGTGGATTATTTCTGTAATTTTGGTGTGAAGAAGGAGGAAGTGGCTAAGCTGATTTTACAGTGCCCTGAATTGTTGAAACTGGATCTGGAGAGGCCAGTATTCAATGTAATGAAGCTGTTGACACACTTTAGCCTCAGCTCTGTAGATCTAGAGGATGTAAGTCGGAGATATGGTCATGTTATGGGAACAAATAAAATGGCTAATCTTCCTAATGTAATGAAGGCTTTGAGTTTACAAGAGTGGTTCTTCAAGAAAATCAAGGATGGAAATCATATGTTGTTAGCAGATTATATCGAAGGATATCCTAAAGAAGAACAAGATCTGGATTATAAAGAAGGGTTAAGGATAATCAGAAGTTTAAAAACACGGGTTCATAATATCAGTAAATTAAATTTCTTGCTTGGCTTGGGCTTTGGAGAAAATACTTTGACCATAAACCTTTTGAATCATCTTCATGGCACCAGTACTGAGCTGCACGAAAGATTCGATTGCCTTCTACGTTCAAAGATTGAGTTCTCCAGGCTCTGTATGATGGTAAGAACAACCCCGAGGATTCTTAACCAAAATTCTGAAACCATTCAGCGAAAGGTGAATTTCTTCCACCAGGAAATGGGAACTACTTTAAACCATGTGGAAACTTTTCCAGCAATATTGTACTATCACTTAGAGGAACGGATTATCCATAGGTACAGGTTCCACAAGTGGCTTTCAGGAAAGGGTCTGAGTTGTAAGAAATATTCTATTCGAAGTATGATTGCGAACAACGAAAAGAAATTTGTAGCTCGTGTCTTCAAAATTCATCCGGCTGCTCCAAAACATTGGTTTGAGCAATTCCGGCACAGCAACTTGTCAGTGTAA 1209 0.3921 MVSELLPRDKVFFSEDGTLFDAACTLCGFGFPWEKLGVVEGQVRVGRIDGLLSDLKLIFLDFELGRFVKGDVDSWHEMCRKLRVFYDLDSRKGVLGELIGRNKSIFVEHREEELVNKVDYFCNFGVKKEEVAKLILQCPELLKLDLERPVFNVMKLLTHFSLSSVDLEDVSRRYGHVMGTNKMANLPNVMKALSLQEWFFKKIKDGNHMLLADYIEGYPKEEQDLDYKEGLRIIRSLKTRVHNISKLNFLLGLGFGENTLTINLLNHLHGTSTELHERFDCLLRSKIEFSRLCMMVRTTPRILNQNSETIQRKVNFFHQEMGTTLNHVETFPAILYYHLEERIIHRYRFHKWLSGKGLSCKKYSIRSMIANNEKKFVARVFKIHPAAPKHWFEQFRHSNLSV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242492g00004 402 Gene3D Transcription termination factor 3, mitochondrial 229 397 IPR038538 -
Stsc242492g00004 402 Gene3D Transcription termination factor 3, mitochondrial 70 204 IPR038538 -
Stsc242492g00004 402 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Stsc242492g00004 402 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Stsc242492g00004 402 SMART mt_12 293 324 IPR003690 GO:0003690|GO:0006355
Stsc242492g00004 402 SMART mt_12 325 359 IPR003690 GO:0003690|GO:0006355
Stsc242492g00004 402 PANTHER CGI-12 PROTEIN-RELATED 77 383 IPR003690 GO:0003690|GO:0006355
Stsc242492g00004 402 Pfam mTERF 80 193 IPR003690 GO:0003690|GO:0006355
Stsc242492g00004 402 Pfam mTERF 275 376 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242492g00004 Stsc-Chr242492 13386 15921 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc242492g00004 mTERF 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242492g00004 - - qsa:O6P43_026967 446.047