Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242489g00003 ATGTTTCGCTGCGATCGTCAGCAAGGTATTAACATGGAAGACAAGGAGGAAATGGAATCACTGCTTGGTCAAGCCGAAATATGGAAGTTCATGACGAGCTTCACAGACTCCATGGCACTAAAATGCGCAGTGGAGCTCCGCATCGCCGACATAATCCACCGCCACGGCGAGCCACTTCCGCTGTCGAAGATAGCCGAAGAAATCGAAGACTCGGCTTGCCCTGAGATCTCGATGCTGGAAAGAATAATGAGGGTTCTTGTAAGAAGAAAGATCTTCAGTTCTCAGATCTCTGAAAATGGGGAAACGGTGTACGGAGGCACACGCGCCTCGAAGTGGATTTTACGTGACGCAAAGATGACGTTGGCGCCAATGTTGCTGCTTGAGAATCATCCCATTCACTTGAACCCTGGTCACTATGTTAGTGAGTGTATAAGGGAAGGAATGAAGAATGGCACTGCGTTTTTCAAGTGCCATGGCCATGAACAATTTGTTATGACAGGCCTGGACCCTGAATATAACAGGCTGTTCAATGAGGGTATGGTTTGCACTGCAAGGGTTGTGTCAAAGTCTGTGATATCAGGGTACAAAGATGGGTTCAAAGAGATTAAGACATTGGTTGATGTTGGAGGTGGAATTGGAGGTTCACTCTCTGAGATTGTGAAGGCATTCCCACACATCAAAGGTATTAACTTTGATTTGCCTCATGTTGTTGCAACGGCACCTATGTATCATGGTATCACCCATCTTGGTGGAGACATGTTTGCTTCCATTCCTCAGGCAGATGCTATTTACATGAAGTGGATTCTACATGATTGGAGCGACGAGCACTGCATGAAGATATTGAAGAACTGCAAGAAGGCAATAGGAGAGAGTGGGAAGGTGATAATTGTGGATCATGTTCTTAAGCCAGAAGGAAACGATCTGTTTGATGACACAGGCTTTGCCTTCGACATGATGCTTCTTGCACACAACAATGGTGGCAAAGAAAGGACCGAAGAAAATTGGAAGTGGCTGTTTAAGGAAACAGGCTTCCCTCGCTACAACATCATCAACATCAATGCTCTTCCATCAATCATTGAGGCATTCCCAATCTGA 1095 0.4575 MFRCDRQQGINMEDKEEMESLLGQAEIWKFMTSFTDSMALKCAVELRIADIIHRHGEPLPLSKIAEEIEDSACPEISMLERIMRVLVRRKIFSSQISENGETVYGGTRASKWILRDAKMTLAPMLLLENHPIHLNPGHYVSECIREGMKNGTAFFKCHGHEQFVMTGLDPEYNRLFNEGMVCTARVVSKSVISGYKDGFKEIKTLVDVGGGIGGSLSEIVKAFPHIKGINFDLPHVVATAPMYHGITHLGGDMFASIPQADAIYMKWILHDWSDEHCMKILKNCKKAIGESGKVIIVDHVLKPEGNDLFDDTGFAFDMMLLAHNNGGKERTEENWKWLFKETGFPRYNIININALPSIIEAFPI 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242489g00003 364 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 363 IPR016461 GO:0008168
Stsc242489g00003 364 FunFam O-methyltransferase family protein 115 362 - -
Stsc242489g00003 364 Pfam O-methyltransferase domain 139 344 IPR001077 GO:0008171
Stsc242489g00003 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 361 IPR029063 -
Stsc242489g00003 364 Gene3D Vaccinia Virus protein VP39 115 364 IPR029063 -
Stsc242489g00003 364 CDD AdoMet_MTases 204 301 - -
Stsc242489g00003 364 PIRSF O-mtase 4 364 IPR016461 GO:0008168
Stsc242489g00003 364 Pfam Dimerisation domain 38 87 IPR012967 GO:0046983
Stsc242489g00003 364 SUPERFAMILY "Winged helix" DNA-binding domain 22 116 IPR036390 -
Stsc242489g00003 364 Gene3D - 9 113 IPR036388 -
Stsc242489g00003 364 PANTHER O-METHYLTRANSFERASE 24 346 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242489g00003 Stsc-Chr242489 12205 15543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242489g00003 38 350 Monolignol Biosynthesis Gene Families AT5G54160 39.688 1.03e-76 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242489g00003 K22588 - gmx:100800801 595.504