Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242489g00002 ATGGAAGACAAGGAGGAAATGGAATCACTGCTTGGTCAAGCCGAAATATGGAAGTTCATGACGAGCTTCACAGACTCCATGGCACTAAAATGCGCAGTGGAGCTCCGCATCGCCGACATAATCCACCGCCACGGCGAGCCACTTCCGCTGTCGAAGATAGCCGAAGAAATCGAAGACTCGGCTTGCCCTGAGATCTCGATGCTGGAAAGAATAATGAGGGTTCTTGTAAGAAGAAAGATCTTCAGTTCTCAGATCTCTGAAAATGGGGAAACGGTGTACGGAGGCACACGCGCCTCGAAGTGGATTTTACGTGACGCAAAGATGACGTTGGCGCCAATGTTGCTGCTTGAGAATCATCCCATTCACTTGAACCCTGGTCACTATGTTAGTGAGTGTATAAGGGAAGGAATGAAGAATGGCACTGCGTTTTTCAAGTGCCATGGCCATGAACAATTTGTTATGACAGGCCTGGACCCTGAATATAACAGGCTGTTCAATGAGGGTATGGTTTGCACTGCAAGGGTTGTGTCAAAGTCTGTGATATCAGGGTACAAAGATGGGTTCAAAGAGATTAAGACATTGGTTGATGTTGGAGGTGGAATTGGAGGTTCACTCTCTGAGATTGTGAAGGCATTCCCACACATCAAAGGTATTAACTTTGATTTGCCTCATGTTGTTGCAACGGCACCTATGTATCATGGTATCACCCATCTTGGTGGAGACATGTTTGCTTCCATTCCTCAGGCAGATGCTATTTACATGAAGTGGATTCTACATGATTGGAGCGACGAGCACTGCATGAAGATATTGAAGAACTGCAAGAAGGCAATAGGAGAGAGTGGGAAGGTGATAATTGTGGATCATGTTCTTAAGCCAGAAGGAAACGATCTGTTTGATGACACAGGCTTTGCCTTCGACATGATGCTTCTTGCACACAACAATGGTGGCAAAGAAAGGACCGAAGAAAATTGGAAGTGGCTGTTTAAGGAAACAGGCTTCCCTCGCTACAACATCATCAACATCAATGCTCTTCCATCAATCATTGAGGCATTCCCAATCTGA 1062 0.4576 MEDKEEMESLLGQAEIWKFMTSFTDSMALKCAVELRIADIIHRHGEPLPLSKIAEEIEDSACPEISMLERIMRVLVRRKIFSSQISENGETVYGGTRASKWILRDAKMTLAPMLLLENHPIHLNPGHYVSECIREGMKNGTAFFKCHGHEQFVMTGLDPEYNRLFNEGMVCTARVVSKSVISGYKDGFKEIKTLVDVGGGIGGSLSEIVKAFPHIKGINFDLPHVVATAPMYHGITHLGGDMFASIPQADAIYMKWILHDWSDEHCMKILKNCKKAIGESGKVIIVDHVLKPEGNDLFDDTGFAFDMMLLAHNNGGKERTEENWKWLFKETGFPRYNIININALPSIIEAFPI 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242489g00002 353 PANTHER O-METHYLTRANSFERASE 13 335 IPR016461 GO:0008168
Stsc242489g00002 353 Pfam Dimerisation domain 27 76 IPR012967 GO:0046983
Stsc242489g00002 353 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 352 IPR016461 GO:0008168
Stsc242489g00002 353 PIRSF O-mtase 1 353 IPR016461 GO:0008168
Stsc242489g00002 353 Gene3D Vaccinia Virus protein VP39 104 353 IPR029063 -
Stsc242489g00002 353 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 350 IPR029063 -
Stsc242489g00002 353 CDD AdoMet_MTases 193 290 - -
Stsc242489g00002 353 FunFam O-methyltransferase family protein 104 351 - -
Stsc242489g00002 353 SUPERFAMILY "Winged helix" DNA-binding domain 11 105 IPR036390 -
Stsc242489g00002 353 Gene3D - 1 102 IPR036388 -
Stsc242489g00002 353 Pfam O-methyltransferase domain 128 333 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242489g00002 Stsc-Chr242489 12202 15990 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242489g00002 27 339 Monolignol Biosynthesis Gene Families AT5G54160 39.688 8.57e-77 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242489g00002 K22588 - gmx:100800801 595.504