Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242478g00001 ATGGGTTCAACCGGTGAAACACAGATAACACCAACGGTGGTGTCCGACGAAGAGGCGAACCTCTTCGCCATGCAGCTAGCAAGTGCCTCTGTTCTGCCAATGGTTCTCAAGTCAGCAATTGAGCTTGACGTGTTGGAGATCATTGCCAAAGCTGGTCCCGGAGTTCACCTTTCTCCGGCCGACATTGCGGCGAAGCTTCCGACCACCAACCCTGATGCTGCGGTGATGCTGGACCGCATGTTGAGGCTGTTGGCTTGCTACAACATCCTCAACCACTCACTCCGAACCCTTCCAGATGGAAAGGTTGAGAGGCTCTATGGTCTTGCACCTGTTGCTAAGTTCTTGGTCAAGAATGAAGATGGTGTCTCTCTTTCTGCTCTTAACCTCATGAATCATGACAAGGTCCTCATGGAAAGCTGGTACTATTTGAAAGAGACAGTGCTTGAAGGAGGGATCCCATTTAACAAGGCTTATGGAATGACAGCATTTGAATACCATGGAACAGATCCAAGGTTCAACAAGGTTTTCAACAAGGGCATGAACGATCACACTACAATAACAATGAAGAAAATCCTTGAGATCTACACAGGCTTTGAAGGTCTTAAATCTCTGGTAGATGTTGGTGGTGGTGTTGGAGCCGTAGTGAACATGATTGTCACCAAGTATCCACATATAAAGGGCATTAATTTTGATCTGCCTCATGTTATTGAAGATGCACCATCTTATCCGGGAGTTGAGCACGTTGGTGGCGACATGTTTGTCAGTGTTCCAAAAGCTGATGCTGTTTTCATGAAGTGGATTTGCCATGACTGGAGTGATGAGCACTGCATAAAGTTTCTGAAGAACTGCTATGATGCAGTCCCCCACAACGGCAAGGTGATCGTGGCCGAATGCATTCTTCCGGTGGCGCCGGATTCTAGCTTGGCCACGAAGGGCGTGGTCCACATCGACGTGATCATGTTGGCTCACAACCCGGGTGGGAAAGAGAGAACAGAAAAAGAGTTTGAGGCTCTTGCCAAGGCTGCTGGATTCCAAGGTTTCCGAGTTGTGTGCTGCGCTTTCAACACCTATATCATGGAATTTCTTAAGAAGCCTTAA 1098 0.4791 MGSTGETQITPTVVSDEEANLFAMQLASASVLPMVLKSAIELDVLEIIAKAGPGVHLSPADIAAKLPTTNPDAAVMLDRMLRLLACYNILNHSLRTLPDGKVERLYGLAPVAKFLVKNEDGVSLSALNLMNHDKVLMESWYYLKETVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMNDHTTITMKKILEIYTGFEGLKSLVDVGGGVGAVVNMIVTKYPHIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAVFMKWICHDWSDEHCIKFLKNCYDAVPHNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEKEFEALAKAAGFQGFRVVCCAFNTYIMEFLKKP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242478g00001 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 363 IPR016461 GO:0008168
Stsc242478g00001 365 PANTHER O-METHYLTRANSFERASE 23 344 IPR016461 GO:0008168
Stsc242478g00001 365 Gene3D Vaccinia Virus protein VP39 116 363 IPR029063 -
Stsc242478g00001 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 361 IPR029063 -
Stsc242478g00001 365 Pfam O-methyltransferase domain 140 345 IPR001077 GO:0008171
Stsc242478g00001 365 FunFam Caffeic acid O-methyltransferase 116 363 - -
Stsc242478g00001 365 FunFam Caffeic acid 3-O-methyltransferase 3 115 - -
Stsc242478g00001 365 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983
Stsc242478g00001 365 SUPERFAMILY "Winged helix" DNA-binding domain 16 119 IPR036390 -
Stsc242478g00001 365 Gene3D - 1 115 IPR036388 -
Stsc242478g00001 365 PIRSF O-mtase 1 363 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242478g00001 Stsc-Chr242478 4314 9216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242478g00001 1 364 Monolignol Biosynthesis Gene Families AT5G54160 74.451 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242478g00001 K13066 - gmx:100780100 673.315