Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242472g00004 ATGATGAACATAATAAAGGGTGAAATTGAGAAGGTGAATTGGAAGGACTTGAGTTACACTGAATTTGTGGAGAGATTCATGCACAAAAACCAACCTTTGTTGCTCGCTGGATTCTTTGAACATCACAATTGGGGAGCTTCACTTGATTGGGTCACCCCTCTTGGCCACCCTAATTTTCAATTTTTCTCCTCAAATTTTGGGGATTCCAAAGTTCAGGTTGCAGATTGTGACACAAGAGAGTTCACTGATCAGAAAAGGGAGGAGATGCTGGTCTCGGATTTTATAGGGCGTTGCTTTCAAGATGTTGAAGGTTCTGCAGTCCAATCTAGCAATGGAAATTCTTCAAGTAATAGTCACTCCGTACCGTATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCAGAATATGTAGCTTATAAGACTCCGATGTACTTTTGTGATGATTGGCTTAACATGTATCTCGACAACTTCAGAATGCATACTGATTCTGACACATACCAAGGGAATAACGAAATATGTTGCTCTGACTATCGTTTTGTATACATGGGAGTTAAAGGATCTTGGACTCCTCTTCATGCCGATGTTTTCCGGTCATATAGTTGGTCGGCAAATGTTTGTGGAAAAAAGAGATGGCTTTTCTTAGATCCTTCCCAGCATCATCTTGTATTTGACAGGAATATGAAAAATTGTGTATATAATATCTTTGATGAAGTATCTGACTCAAAATTTCCTGGTTTCAAAAAGGCTATCTGGTTAGAATGCATCCAAGAAGCCGGTGAAATTATATTTGTTCCCAGTGGATGGTACCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAACTGGTTCAATGCGTATAACCTTTCATGGGTGTGGAATTTACTTTTAAAGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATGTATGTGAGGATTTCGAAGGTCTCTGCCAGCGCAATCTGGCTGCTAACACAGGGATGAACTTTTATGACTTCTTTACTTTCATATCATGCTTCACCTTGGCCAACATGGTCTTACTTTGTTATATAAATGGAACACATGGAAATATCACTCAAATCTCATCAACAATATCTCAGCATTTATTGATGAATCTCGGATCCATAAGGAAGGTTGCATCGGAGATGAAAGACAAGCATGCTCTAAACGGAAATCGGGATCGCGCTGTGGACATTATGAAAACACTTGAAGATCCTAGGTTTCGCAAATTGTGCATGGATATAGGAAGAACATATCTAATGATACATGAACAGTCTCATTTGTCCTTCCATTTTGAGAGAGCTTCACTTATCGAAATAGCAGATCTCACTGTTTTGAAAGCATACACTTCATCTCAGTTCTACACACCAGAAGATCTCATTGAGTTCATAGACAATGCTGTTGCAGAACATGGTAACTTTACATCAACTCATCTGTAA 1455 0.3876 MMNIIKGEIEKVNWKDLSYTEFVERFMHKNQPLLLAGFFEHHNWGASLDWVTPLGHPNFQFFSSNFGDSKVQVADCDTREFTDQKREEMLVSDFIGRCFQDVEGSAVQSSNGNSSSNSHSVPYLKDWHFVKEYPEYVAYKTPMYFCDDWLNMYLDNFRMHTDSDTYQGNNEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLDPSQHHLVFDRNMKNCVYNIFDEVSDSKFPGFKKAIWLECIQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLKDYNEAKEYIEDIKDVCEDFEGLCQRNLAANTGMNFYDFFTFISCFTLANMVLLCYINGTHGNITQISSTISQHLLMNLGSIRKVASEMKDKHALNGNRDRAVDIMKTLEDPRFRKLCMDIGRTYLMIHEQSHLSFHFERASLIEIADLTVLKAYTSSQFYTPEDLIEFIDNAVAEHGNFTSTHL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242472g00004 484 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 12 341 - -
Stsc242472g00004 484 SMART cupin_9 144 302 IPR003347 -
Stsc242472g00004 484 Gene3D Cupin 2 287 - -
Stsc242472g00004 484 Pfam Cupin-like domain 21 285 IPR041667 -
Stsc242472g00004 484 ProSiteProfiles JmjC domain profile. 130 302 IPR003347 -
Stsc242472g00004 484 SUPERFAMILY Clavaminate synthase-like 18 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242472g00004 Stsc-Chr242472 10457 13869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242472g00004 7 294 Glycosyltransferase AT1G78280 21.452 1.41e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc242472g00004 Cupin_8 3.6e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242472g00004 - - aip:107632417 828.935