Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242472g00003 ATGGCTGATCCAACATCACCTGCTCCTCAAAAGGCTCAATCCTCTTCTTCTGATATGAAAACTGAAAAAAAGGATTACTCAACTGCGATTTTAGAGCGAAAGAAGTCTCCGAACCGGCTTGTTGTGGATGAATCAATCAATGATGATAATTCAGTTGTCAATTTGCACCCTGACACCATGGAAAAGCTCAATCTTTTCCGGGGGGACACTGTTCTGGTTAAGGGGAAGAAGAGGAAGGACACTGTTTGCATTGTTCTTGCTGATGATCAGTGCGAAGAGCCGAGAATTCGGATGAACAAAGTTGTAAGGTCTAATCTTAGGGTTAGGCTTGGAGATGTTGTCTCTGTTCATCAATGTCCTGATGTGAAGTATGGGAAGCGAGTTCACATCCTTCCCATCGATGATACTATCGAGGGTGTCACGGGTAACTTGTTCGATGCATATCTAAAGCCATATTTTATGGAGTCGTATCGGCCTGTGAGGAAAGGGGACTTGTTTCTTGTTAGGGGCGGAATGCGAAGTGTAGAGTTCAAGGTGATAGAAACTGATCCTGGTGAATATTGTATTGTGGCACCGGATACCGAAATCTTCTGCGAGGGAGAACCGGTTAAACGTGAGGATGAAGAGAGACTAAATGAAGTTGGCTATGATGATGTTGGGGGTGTTAGGAAGCAAATGGCTCAGATTCGTGAGCTTGTAGAACTTCCTCTTAGGCATCCGCAACTCTTCAAATCGATCGGCGTTAAGCCCCCGAAAGGAATCTTGCTTTATGGACCACCGGGTTCCGGGAAGACTCTAATTGCAAGAGCAGTCGCTAATGAGACAGGTGCGTTCTTCTTTTTGATCAATGGACCGGAAATCATGTCGAAGCTAGCTGGTGAAAGTGAAAGCAATCTAAGGAAGGCGTTTGAAGAAGCCGAAAAGAACTCCCCTTCTATCATCTTCATCGACGAATTGGATTCAATTGCTCCTAAAAGAGAAAAGACACATGGTGAGGTAGAGAGGCGTATTGTTTCGCAACTTTTGACTCTAATGGATGGCCTCAAGACCCGTTCGCATGTTATCGTGATCGGGGCGACTAATAGGCCCAACAGTGTTGATCCTGCTCTGAGAAGGTTTGGAAGGTTTGATCGCGAAATTGATATCGGTGTACCCGATGAAGTTGGAAGGTTGGAGGTTCTTAGAATTCATACTAAGAACATGAAACTTTCTGATAATGTTGATCTTGAAAGAGTTGCAAGGGACACTCATGGTTATGTAGGAGCAGACCTTGCTGCTCTTTGCACAGAGGCCGCGCTGCAGTGTATAAGAGAGAAGATGGATGTGATTGACTTGGAAGATGAAACAATAGATGCTGAGATTTTGAATTCCATGGCAGTCACCAATGAGCACTTCCAAACTGCTTTGACTTCCTCGAACCCGTCTGCATTGCGTGAAACAGTTGTGGAGGTTCCAAATGTTTCCTGGGATGACATTGGAGGTCTAGAGAATGTTAAGAGGGAGCTTCAAGAGACGGTTCAATATCCGGTGGAACATCCCGAAAAGTTTGAGAAATTCGGCATGTCGCCTTCCAAAGGTGTTCTATTTTATGGCCCTCCGGGTTGCGGCAAAACCCTGCTTGCAAAAGCAATTGCAAATGAATGCCAGGCCAACTTCATAAGTGTCAAGGGACCCGAGTTGCTTACTATGTGGTTCGGCGAAAGTGAGGCAAATGTTCGCGAGATATTCGATAAGGCCCGGCAGTCCGCACCGTGTGTGCTTTTCTTCGATGAACTCGACTCTATTGCAACCCAGGTTCTAAATAGCCTATACTCTTAA 1818 0.4538 MADPTSPAPQKAQSSSSDMKTEKKDYSTAILERKKSPNRLVVDESINDDNSVVNLHPDTMEKLNLFRGDTVLVKGKKRKDTVCIVLADDQCEEPRIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCIVAPDTEIFCEGEPVKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRSHVIVIGATNRPNSVDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDNVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALTSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQVLNSLYS 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242472g00003 605 FunFam Transitional endoplasmic reticulum ATPase 16 121 - -
Stsc242472g00003 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 475 IPR027417 -
Stsc242472g00003 605 PANTHER AAA-FAMILY ATPASE 206 445 - -
Stsc242472g00003 605 SMART CDC48_N_2 39 122 IPR003338 -
Stsc242472g00003 605 FunFam Uncharacterized protein 484 598 - -
Stsc242472g00003 605 Pfam Cell division protein 48 (CDC48), domain 2 141 204 IPR004201 -
Stsc242472g00003 605 ProSitePatterns AAA-protein family signature. 354 372 IPR003960 GO:0005524|GO:0016887
Stsc242472g00003 605 CDD RecA-like_CDC48_r1-like 218 383 - -
Stsc242472g00003 605 Gene3D - 122 218 - -
Stsc242472g00003 605 Pfam ATPase family associated with various cellular activities (AAA) 527 599 IPR003959 GO:0005524|GO:0016887
Stsc242472g00003 605 Pfam ATPase family associated with various cellular activities (AAA) 254 383 IPR003959 GO:0005524|GO:0016887
Stsc242472g00003 605 FunFam Cell division control 48 122 218 - -
Stsc242472g00003 605 FunFam Cell division control 48 385 476 - -
Stsc242472g00003 605 Gene3D - 16 121 - -
Stsc242472g00003 605 Gene3D - 476 602 IPR027417 -
Stsc242472g00003 605 SMART CDC48_2_2 139 205 IPR004201 -
Stsc242472g00003 605 Gene3D - 219 383 IPR027417 -
Stsc242472g00003 605 Gene3D - 385 475 - -
Stsc242472g00003 605 Pfam AAA+ lid domain 406 448 IPR041569 -
Stsc242472g00003 605 SMART AAA_5 250 386 IPR003593 GO:0016887
Stsc242472g00003 605 SMART AAA_5 523 605 IPR003593 GO:0016887
Stsc242472g00003 605 Pfam Cell division protein 48 (CDC48), N-terminal domain 39 120 IPR003338 -
Stsc242472g00003 605 FunFam Transitional endoplasmic reticulum ATPase 215 383 - -
Stsc242472g00003 605 SUPERFAMILY Cdc48 domain 2-like 121 213 IPR029067 -
Stsc242472g00003 605 SUPERFAMILY ADC-like 35 119 IPR009010 -
Stsc242472g00003 605 MobiDBLite consensus disorder prediction 1 30 - -
Stsc242472g00003 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 604 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242472g00003 Stsc-Chr242472 5592 9099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242472g00003 456 597 Calmodulin-binding Proteins AT3G56690 49.296 2.26e-44 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242472g00003 K13525 - gmx:100798680 1137.09