Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242467g00005 ATGCCTATCACCCATGAATTACAAGAAGCCCAAACCCAAGTCTTGTTTCAGATAAGGAAGTACCTTGAATACCCTACCTCTTTACAGATTTGGGGAAATTACAACAATGACCTTTGTTCCCTTCCTTCATCTTCTCACACTACCATTAAGTGTGAGGGCAATTCGGTAACTGAGCTCAAAATCATTGGGGACAAACCTAATAATGTGAGGGCAGACAAAAACAAAAACAACTTCAATGGATTTGGAGTTTCTAATTTAACACTATCCCCAAATTTCTCAGTTGATTCTTTTGTCACCACATTGACAAGGCTAACAAGCTTAAGGGTCCTTAGCTTGGTGTCCTTAGGGATTTGGGGTCCACTTCCGAATAAGATTCATAGGTTATCTGATCTTCAAGTTTTGGACTTAAGCTCAAATTTCTTGTTTGGTTCTGTCCCTCCAAGAATGGCAACAATGGTTAATCTTCATACACTATCACTTGATGGAAATTACTTTAATGCCACCATACCCAATTGGTTTGACTCAATGTCTAATCTTAATGTGTTGACTTTGAAGAACAACCACTTAATTGGTTCATTCCCTTCCTCACTATGCAAAATTAAGTCCTTTAATGTTATTTCCTTGTCCCAAAATGAGTTATCTGGTGAACTACCTGATCTGAGTGCTCTCACTTCCCTTCATGTATTGGATTTGAGAGAGAATCATTTGGATTCTAAGTTACCATTGATGCCTAAAACAGTGGTTACAGTTCTTCTAAGCAAAAACTCATTCTCAGGTGAGATTCCTAGTGAGTTTGGTGGACTCGAACGGCTTCAACATCTTGATCTTTCGTCGAATTATCTTAGTAAGATACCTCCGAATGCATTGTTCTATTTGCCAAACATAAGTTATTTGAATCTGGCTAGCAATGTGCTTAGTGGTTCCCTCCCCAAAAAGCTAAGGTGTGGCAATAAGCTTGGGTTTGTGGATATTTCTAATAACAAGCTAAATGGTGCACTTCCTTCTTGCTTGGCCGGCACGTCTGATCGACGAGTTGTTAGACACGGTGGAAACTGTTTGTCTGCTGATTTCCAGCCTCAGCGGCGAGGGTCTTATTGTAATTCAGGATTGAAGAAGTTCTCGGCATGGGAAATCGCTGCGGCGGTTGGTATCATTTCTGCAGTAGTTCTTGTGATTTTAGCTTCCGGAGTTTCACTCTATAGACAATGTTACTTAAAGGAAACATATGATGAGCATGAAGAGTTGCCAAAAGCTGTCCAAGATTCCTCAACAACAGGGGTTTCCTCTGAATTCCTTGCCAGTGCCAGATTCATTTCACAGGTAGTGAAGATAGGGACACAAGCGACTCCGTTTTGTCGACAGTTTTCAACTGAAGAGTTGAAGGAAGTCACCAAAAATTTTGACTTGTCAACTTATATTGGCGAAGGCTCCATAGGGAAGCTCTACAAAGCTAAACTGGAGAATGGATCCTATGCAGTGATACGATCTGTGGCTTTGTTGAAAAAATGCTCTGTTCAAAACCTCAAAATTCGGTTGGACTTACTCTCAAAACTTCAACATCCAAACTTGGTTAGCCTATTGGGTTACAGCATTGATGGTGGTGGACAAGATGACTCTAGTAATCCCAAACTTTATCTTGTATACGAGTGCGTGCCAAATGGAGATTATCGCAGCTGTCTATCAGAATTTTCACCAGAGAAGCCATTAAAGTGGTCTGATAGATTGGCAATTTTGATTGGAGTTGCCAAGGCAGTCCATCATTTACATACTAGTGTCATACCTGGTTGTTTCGGAAACCATTTAAAGACGAACAATATTTTACTTGATGAGCATCACTTTCCGAAACTAAGCGACTATGGCATGTCCATCATTGCTGAAGAGATTGAAAAGCCTGAGGCAAAGGAAGAGAATCCACAGTCATGTGAAAGGACAAAATTAGATGACGATGTTTATAACTTCGGATTCATACTGTTTGAGTCACTTGTTGGACCTATTGCAAGCGAAAAAGGGGAAGCATTTTTTCTTAGTGAAAAGGTTAGGGATAAGCTTTCAGAAACTTCTGCCTTAAAATTTTCTTTGTATGAAATATCATTACTTTATAAACAAAGATTCGGAAAGTATAAAAATTCATAA 2133 0.3957 MPITHELQEAQTQVLFQIRKYLEYPTSLQIWGNYNNDLCSLPSSSHTTIKCEGNSVTELKIIGDKPNNVRADKNKNNFNGFGVSNLTLSPNFSVDSFVTTLTRLTSLRVLSLVSLGIWGPLPNKIHRLSDLQVLDLSSNFLFGSVPPRMATMVNLHTLSLDGNYFNATIPNWFDSMSNLNVLTLKNNHLIGSFPSSLCKIKSFNVISLSQNELSGELPDLSALTSLHVLDLRENHLDSKLPLMPKTVVTVLLSKNSFSGEIPSEFGGLERLQHLDLSSNYLSKIPPNALFYLPNISYLNLASNVLSGSLPKKLRCGNKLGFVDISNNKLNGALPSCLAGTSDRRVVRHGGNCLSADFQPQRRGSYCNSGLKKFSAWEIAAAVGIISAVVLVILASGVSLYRQCYLKETYDEHEELPKAVQDSSTTGVSSEFLASARFISQVVKIGTQATPFCRQFSTEELKEVTKNFDLSTYIGEGSIGKLYKAKLENGSYAVIRSVALLKKCSVQNLKIRLDLLSKLQHPNLVSLLGYSIDGGGQDDSSNPKLYLVYECVPNGDYRSCLSEFSPEKPLKWSDRLAILIGVAKAVHHLHTSVIPGCFGNHLKTNNILLDEHHFPKLSDYGMSIIAEEIEKPEAKEENPQSCERTKLDDDVYNFGFILFESLVGPIASEKGEAFFLSEKVRDKLSETSALKFSLYEISLLYKQRFGKYKNS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242467g00005 710 Gene3D Ribonuclease Inhibitor 246 369 IPR032675 -
Stsc242467g00005 710 SUPERFAMILY Protein kinase-like (PK-like) 449 666 IPR011009 -
Stsc242467g00005 710 Pfam Protein kinase domain 470 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242467g00005 710 Gene3D Phosphorylase Kinase; domain 1 429 549 - -
Stsc242467g00005 710 Gene3D Ribonuclease Inhibitor 8 245 IPR032675 -
Stsc242467g00005 710 SMART LRR_typ_2 268 291 IPR003591 -
Stsc242467g00005 710 SMART LRR_typ_2 176 200 IPR003591 -
Stsc242467g00005 710 SMART LRR_typ_2 223 246 IPR003591 -
Stsc242467g00005 710 SMART LRR_typ_2 128 152 IPR003591 -
Stsc242467g00005 710 SMART LRR_typ_2 292 316 IPR003591 -
Stsc242467g00005 710 ProSiteProfiles Protein kinase domain profile. 467 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242467g00005 710 Pfam Leucine rich repeat 154 213 IPR001611 GO:0005515
Stsc242467g00005 710 Pfam Leucine rich repeat 248 305 IPR001611 GO:0005515
Stsc242467g00005 710 Gene3D Transferase(Phosphotransferase) domain 1 551 697 - -
Stsc242467g00005 710 ProSiteProfiles Leucine-rich repeat profile. 270 291 IPR001611 GO:0005515
Stsc242467g00005 710 SUPERFAMILY L domain-like 81 355 - -
Stsc242467g00005 710 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 83 338 - -
Stsc242467g00005 710 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 247 371 - -
Stsc242467g00005 710 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 8 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242467g00005 Stsc-Chr242467 22194 26023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242467g00005 4 679 Miscellaneous Gene Families AT5G14210 55.669 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Stsc242467g00005 Pkinase 6.9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242467g00005 - - gmx:100813412 964.526