Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242464g00001 ATGGCAAGTTGTGGTAGAGAAGGAGCTGTGAGGCAGTACATAAGATCCAAGGTGCCTCGTTTGAGATGGACTCCTGAGCTTCATAGATGCTTTGTTCATGCCATTGATAGCCTTGGAGGTCATCACAAGGCTACCCCTAAGCTTGTTCTTCAGTTGATGGACGTCAAAGGCCTCACAATTTCACACGTCAAGAGCCATCTTCAGATGTACAGAAGCATGAGGGGTGACTTGGGAAGACAAGGTAGGATATCAAGCCAGCATAGGAACCAATCTTTTGAGGAGCATGATGATGGGTGTGTTGATGAAGTGAATGATGTTAATAATCTTATTTCTCATCATCATCATCATCATCATCATCATCATCAAAACTATCTTCATCCATCTTCAAAACCCGTTGGAAAAGAAGAATCCGATTCTCTCTTCGGATACAGTAACTTCCCCTCAAAAAGGGCTAGAATAGAGAGAAACTGTTCCATTTCGGAGAAGCTGCAATGCAGACAGCAGAGAACAGTGCCATATCCGTACTCCTTTTATGATTATGCTTATTCAACACACCAACAACAACCACCACCTCATTCCACAGTTTTCCCTGTGCTGCCACCACTTCTTGGAAATTTCCTTCAGGTTACTAAATTAAATGATAGAGAGACCACATCGGAGGCAATGACTGATAATAATAATAATAATAATAATAATAATAATAATGTACTTTTGAAGAACACGACCAGTGAGAAGGAGGCACGTGCAGAAGAAGAAGAGGAAGATGAAGATGTTGGAAGAGTTTGTGAATTGTCATTGTCTCTCACATTGCCAAATCCTTCACCCCAGAGAAGTAGTAATGTTTCTACTTCAGCCTCAGCCAGTGAGATCACTGAGGCTGCTATCTCTTCATCATGTTCCACTACTCTCAAAGATAGGAGGATTAATTTAGACTTGTCTCTAGCTCTTTCTGGAAATTGA 960 0.4135 MASCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIDSLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDLGRQGRISSQHRNQSFEEHDDGCVDEVNDVNNLISHHHHHHHHHHQNYLHPSSKPVGKEESDSLFGYSNFPSKRARIERNCSISEKLQCRQQRTVPYPYSFYDYAYSTHQQQPPPHSTVFPVLPPLLGNFLQVTKLNDRETTSEAMTDNNNNNNNNNNNVLLKNTTSEKEARAEEEEEDEDVGRVCELSLSLTLPNPSPQRSSNVSTSASASEITEAAISSSCSTTLKDRRINLDLSLALSGN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242464g00001 319 Gene3D - 18 74 - -
Stsc242464g00001 319 MobiDBLite consensus disorder prediction 268 289 - -
Stsc242464g00001 319 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Stsc242464g00001 319 MobiDBLite consensus disorder prediction 216 237 - -
Stsc242464g00001 319 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Stsc242464g00001 319 MobiDBLite consensus disorder prediction 112 139 - -
Stsc242464g00001 319 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Stsc242464g00001 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Stsc242464g00001 319 MobiDBLite consensus disorder prediction 78 98 - -
Stsc242464g00001 319 FunFam Myb family transcription factor 17 75 - -
Stsc242464g00001 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 6 128 IPR046955 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242464g00001 Stsc-Chr242464 5248 9076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242464g00001 1 74 G2-like Transcription Factor Family AT1G14600 73.418 7.71e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc242464g00001 Myb_DNA-binding 1.3e-05 CL0123