Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242459g00001 ATGAGAAAACCTTGTTGTGACAAAGAAGGTACCATCAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAACTCATTGATTACATCCAACTTCATGGTGAAGGCTGTTGGCGTTCCCTTCCAAAAGCCGCAGGGCTTCATCGTTGCGGTAAAAGCTGCAGATTGAGATGGATAAATTATTTACGACCAGACATTAAACGCGGAAACTTTGACCAAGATGAAGAAGACCTCATCATCAAACTCCATGCCCTGCTTGGCAACCGGTGGTCACTTATAGCGGGAAGATTGCCGGGACGCACTGACAATGAAATCAAGAACTACTGGAATTCTCATATCCGGCGAAAGCTAATCAACAGGGGGATTGATCCAAACAACCACAAGTTATATCAAACCTTTCCTCTTCCTAATAAAGCTCCTCATACTGAACCATCCTTTGATTCCATGAACCAACACCAAACTCTGCTTCCTTCTAACAAACCTTCCTTTCGTGTTGTTGCCGCTCTTGATGATGATGATGATGATGATAGGAGTTCCGACACTCACCACAGCTGTCTTCTAGAAACTTCTTCTGCATCCCACCAGCTTAATCTTGACCTAACCATTGCTTTCCCTGCTGATTCTTCGACCACTAGGTTATTTACTCTTGCGGAAGAAGACAAGAACAAGAATAATATGCCTAAACCATCAACTTCTGAGAACGTAGATGAATCCACCCCTATCCTTCTTTTGTTTCAATAA 735 0.4313 MRKPCCDKEGTIKGAWSKQEDQKLIDYIQLHGEGCWRSLPKAAGLHRCGKSCRLRWINYLRPDIKRGNFDQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEIKNYWNSHIRRKLINRGIDPNNHKLYQTFPLPNKAPHTEPSFDSMNQHQTLLPSNKPSFRVVAALDDDDDDDRSSDTHHSCLLETSSASHQLNLDLTIAFPADSSTTRLFTLAEEDKNKNNMPKPSTSENVDESTPILLLFQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242459g00001 244 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Stsc242459g00001 244 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Stsc242459g00001 244 Gene3D - 12 65 - -
Stsc242459g00001 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Stsc242459g00001 244 CDD SANT 68 111 IPR001005 -
Stsc242459g00001 244 FunFam MYB transcription factor 67 127 - -
Stsc242459g00001 244 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Stsc242459g00001 244 CDD SANT 15 60 IPR001005 -
Stsc242459g00001 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Stsc242459g00001 244 FunFam MYB-related transcription factor 12 65 - -
Stsc242459g00001 244 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Stsc242459g00001 244 MobiDBLite consensus disorder prediction 216 237 - -
Stsc242459g00001 244 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Stsc242459g00001 244 Gene3D - 67 130 - -
Stsc242459g00001 244 SMART sant 65 113 IPR001005 -
Stsc242459g00001 244 SMART sant 12 62 IPR001005 -
Stsc242459g00001 244 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242459g00001 Stsc-Chr242459 5292 6537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242459g00001 2 129 MYB Transcription Factor Family AT4G38620 78.125 1.52e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc242459g00001 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242459g00001 K09422 - qsu:112003172 298.901