Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242457g00001 ATGACGAGCAGCCTCGCCCTCCACGCCTCGTGCCGGCAACCTCCGACGACGACGCAGCAGCCTCGCCCTCCACGGTCCAAGCTCGCCGACAGCCTCCGCCGACAGCCTCCGCCATCCTCCGACCTCGTCAGATCCTATAAACCGGTCCGACCTGGGCGACCTTGGTTCCACTTCGGTCAGACCGTTAAACCATTGAACCAGTCACTCTACTGGTTCAATAACCGGTCCAGTTCTCGCAACATTGCTTTATGCAGCTATGACGCAGCGAAATTTGATCCCTTGGGCATTAACCTGGATTTATCATCCCGGTTAAATCCTACTTGGGAGAATCTGGTCTCCTTGTTTTCACAGGCATTTGAGAGTACTTCAGGTACCGACAAGGAAAAACCGAATTCTTCTCGAGGATTAACAGCTGCTATAGAGGATAGCTCAATTGATTTTGGTGACTTCTTTAAAGGTCCATTGCCAGGAAAGTTTCTCAAGCTTTTAGGGCTTCTTGCATTGTCACGTCTCGGTGTGTATATACCTCTAGGTGGGGTTAATAGGGAGGCTTTTATTGGAAATTTAGATCAGAATAGTTTATTGAGCACTCTGGACTCGTTTTCTGGAGGAGGTATCGGTAGGCTTGGGATATGTTCCCTCGGTATTGTTCCCTTCATCAATGCACAAATTGTTTTCCAGCTTCTTGCACAAGTATATCCTAAGTTGCAAGATCTTCAGAAAAGAGAAGGTGAGGCTGGAAGAAAGAAAGTTCTTCAATACACTCGATATGCATCAGTTGGATTTGCGATTGTACAGGCAATTGGCCAAGTCGTCTTTCTGCGTCCTTATGTGAACGACTTTAGTACCGAGTGGGTTCTTTCATCTGTTATCTTGTTGACTCTTGGCTCTTTGTTTACAACATACATAGGCGAACGAATCACAGACCTAAAACTTGGCAATGGCACATCTCTTTTGATATTTACAAACATTATCTCCTACTTGCCAGCTTCTTTTGGTCGGACAATTGCCCAGGCATTTAATGATGNNNNNNNNNNTGTGTCCTTTTTTCTGTTGGTAGTTGGTATTGTCTACGTTCAGGAAGCAGAGAGAAAAATTCCTCTTAACTATGCTTCAAGATTCACTAGCAAAAGCAGAGGACTTGAAAAATCGGCCTACTTACCCTTTAAGGTAAATAGTTCTGGGGTAATGCCCATCATATTCTCTACATCATCATTAGCTCTTCCTGGTACCTTAGCACGCTTCACTGGTTTGAATGCATTGAAGAATGCTGCAGTAGCTTTGAACCCAGGGGGCTCCTTCTATCTTCTATTTAACATATTTTTGATTGCCTTCTTCAACTACTATTACACCTTCCTACAATTGGATCCTGATGATGTGAGTGAGCAATTGAAACGTCAAGGTGCTTCAATTCCTCTTGTCAGACCAGGCAGAAGTACAGCTACATTTATCAAAACAGTTCTTAGTCGAATATCAGTTCTGGGTTCGACGTTTCTGGCTATTTTGGCTGCTGGTCCAGCTGTTGTTGAGCAGACAACGCACTTGACTGCATTCAGGGGATTTGCAGGAACGTCAATTCTTATTCTTGTTGGTTGCGCAACAGATACAGCAAGAAAAGTTCAAGCTGAGATCATATCTCAGAAGTACAAGAACATAGAATTCTATGACTTCGACAAGTACTGA 1683 0.4409 MTSSLALHASCRQPPTTTQQPRPPRSKLADSLRRQPPPSSDLVRSYKPVRPGRPWFHFGQTVKPLNQSLYWFNNRSSSRNIALCSYDAAKFDPLGINLDLSSRLNPTWENLVSLFSQAFESTSGTDKEKPNSSRGLTAAIEDSSIDFGDFFKGPLPGKFLKLLGLLALSRLGVYIPLGGVNREAFIGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQVYPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVVFLRPYVNDFSTEWVLSSVILLTLGSLFTTYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTIAQAFNDXXXXVSFFLLVVGIVYVQEAERKIPLNYASRFTSKSRGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLNALKNAAVALNPGGSFYLLFNIFLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRSTATFIKTVLSRISVLGSTFLAILAAGPAVVEQTTHLTAFRGFAGTSILILVGCATDTARKVQAEIISQKYKNIEFYDFDKY 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242457g00001 560 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 151 552 IPR002208 GO:0015031|GO:0016020
Stsc242457g00001 560 SUPERFAMILY Preprotein translocase SecY subunit 151 543 IPR023201 -
Stsc242457g00001 560 NCBIfam preprotein translocase subunit SecY 158 549 IPR002208 GO:0015031|GO:0016020
Stsc242457g00001 560 FunFam Preprotein translocase subunit SECY, chloroplastic 150 549 - -
Stsc242457g00001 560 PRINTS Preprotein translocase SecY subunit signature 522 540 - -
Stsc242457g00001 560 PRINTS Preprotein translocase SecY subunit signature 159 177 - -
Stsc242457g00001 560 PRINTS Preprotein translocase SecY subunit signature 209 229 - -
Stsc242457g00001 560 PRINTS Preprotein translocase SecY subunit signature 309 332 - -
Stsc242457g00001 560 PRINTS Preprotein translocase SecY subunit signature 433 455 - -
Stsc242457g00001 560 PRINTS Preprotein translocase SecY subunit signature 488 506 - -
Stsc242457g00001 560 PRINTS Preprotein translocase SecY subunit signature 394 413 - -
Stsc242457g00001 560 PRINTS Preprotein translocase SecY subunit signature 283 308 - -
Stsc242457g00001 560 PRINTS Preprotein translocase SecY subunit signature 251 274 - -
Stsc242457g00001 560 ProSitePatterns Protein secY signature 1. 210 229 IPR030659 -
Stsc242457g00001 560 MobiDBLite consensus disorder prediction 1 16 - -
Stsc242457g00001 560 Pfam SecY 211 536 IPR002208 GO:0015031|GO:0016020
Stsc242457g00001 560 MobiDBLite consensus disorder prediction 1 46 - -
Stsc242457g00001 560 Gene3D SecY subunit domain 150 549 IPR023201 -
Stsc242457g00001 560 Hamap Protein translocase subunit SecY [secY]. 147 553 IPR026593 -
Stsc242457g00001 560 ProSitePatterns Protein secY signature 2. 302 319 IPR030659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242457g00001 Stsc-Chr242457 1347 6850 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242457g00001 75 560 Chloroplast and Mitochondria Gene Families AT2G18710 81.653 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242457g00001 K10956 - gmx:100810430 789.26