Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242454g00004 ATGAACATGGAGGCTGAGTTTCACAAAGAGCAACAAGTGCTTCTTCTTGCTGACCCTTCTTGCTCAAACCTTTCTACCTCTTCAACCACCCTTGATGACCTCTTCAATCCACAGAACACGGAAGTGGATGTTGGGTTGGAATGGTTATCAGTTTTTGTTGAAGACTGTTTTTCAAACCCACCAAGCTATATATTGGGACCTTCTTCAAAGAGTGTTGTTGAGGCCAAAACAACAACCACCATAACTACTACCTGCTCCTCCAACAAGAACAACCCTTCTTCTTCTTCTTCTTCTTCTTCAACCATACTTCTGAGGCAAAACAACTTTTCAGTCCCTGTTAAAGCCAGAAGCAAAAGAAAGAGACTCTCATCAGCAGCAGTTACCAACAGAAGAAGCAAAACCCTTTTCAGCATTTGGGCACACCAGAACGATGAGCCCTTGATTTCAGACCCTCCTTTGTTAAAACAGACTCATTGGTTAGCAGATAGTGAACTCTTTGTTTTGCCAAAGCAGCATAAGGAGGATGGTGATGAGAAAGATGTAATAGAAAAAGTAGTGAGTGATGAAAAGAGGGAAAGTGTTGACCATGGTGGTGGTGATAATGATGATGATGGTGGGAATAATAATAGTAACAATAATAAGAGTAGTAGTGGTGAGAATCCAATGCCAAGAAGGTGCACACATTGTTTGGCACAAAGGACCCCACAATGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTACAAATCTGGTAGGTTGTTACCAGAGTATAGGCCAGCAAAGAGTCCTACTTTTGTAAGCTACTTGCATTCCAATTCTCACAAGAAAGTTTTGGAGATGAGGCTGGCTGCCTCTACTTAA 882 0.4263 MNMEAEFHKEQQVLLLADPSCSNLSTSSTTLDDLFNPQNTEVDVGLEWLSVFVEDCFSNPPSYILGPSSKSVVEAKTTTTITTTCSSNKNNPSSSSSSSSTILLRQNNFSVPVKARSKRKRLSSAAVTNRRSKTLFSIWAHQNDEPLISDPPLLKQTHWLADSELFVLPKQHKEDGDEKDVIEKVVSDEKRESVDHGGGDNDDDGGNNNSNNNKSSSGENPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVLEMRLAAST 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242454g00004 293 ProSitePatterns GATA-type zinc finger domain. 226 251 IPR000679 GO:0006355|GO:0043565
Stsc242454g00004 293 MobiDBLite consensus disorder prediction 184 225 - -
Stsc242454g00004 293 Gene3D - 216 283 IPR013088 GO:0006355|GO:0008270
Stsc242454g00004 293 Pfam GATA zinc finger 226 260 IPR000679 GO:0006355|GO:0043565
Stsc242454g00004 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 283 - -
Stsc242454g00004 293 SMART GATA_3 220 274 IPR000679 GO:0006355|GO:0043565
Stsc242454g00004 293 ProSiteProfiles GATA-type zinc finger domain profile. 224 256 IPR000679 GO:0006355|GO:0043565
Stsc242454g00004 293 FunFam GATA transcription factor 214 293 - -
Stsc242454g00004 293 MobiDBLite consensus disorder prediction 203 222 - -
Stsc242454g00004 293 CDD ZnF_GATA 225 272 IPR000679 GO:0006355|GO:0043565
Stsc242454g00004 293 PANTHER GATA TRANSCRIPTION FACTOR 13 289 - -
Stsc242454g00004 293 MobiDBLite consensus disorder prediction 184 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242454g00004 Stsc-Chr242454 23662 25185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242454g00004 22 288 C2C2-Gata Transcription Factor Family AT4G32890 39.700 1.54e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc242454g00004 GATA 1.3e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242454g00004 - - adu:107494524 382.489