Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242453g00002 ATGGCAACTGAAAAGGTTAGGTGTTGCACCAAATTTGTTGAGAACTCTCAGCACTATTTTGCGATGATTATTTTGCAGTTTGTGTACGGTGGCATGAACATTATCACTAAAGTTTCCCTCAACAAAGGCATGAGCCACTATGTGCTTGTGGTTTATCGCCAAGTCTTTGCAACTGTTGCCATTGCTCCATTAGCTATCATCTTTGAAAGGAAACATCAACCAAGGATAACATTCCCAATTTTCATACAAATTTTTGTCCTAGCTCTGCTTGGGCCTGTGATAGATCAAAATTTGTACTATGCTGGGTTGAAATTCACTTCCCCTACCTTCGCATGTGCAATGAGCAACACACTTCCTGCCATGACCTTTGTGATGGCTGTTTTATGCAGGATGGAAAAGATCAACATGAAGAAATTGAAGTGTCAAGCCAAGGTAATAGGCACCATTGTCACGGTAGCTGGGGCCACTGTGATGGCCTTGTACAAAGGCCCTGTTGTGGAGATGGTGTGGACCAAACATGCTTCTCATCATCTTCAACATCATAGTAAAACAAATTATACAAATACCAAAATACCCTCTGAAAAAGATTGGTTCATAGGCTCCATCTTTGTTATCATTTCTACCATAGCTTGGGCTTCCCTCTTTGTTTTACAGGCCAAAGTGATAGTGACCTACAAGAAACATCAACTTAGCCTCACATCACTGATCTGCTTCATAGGAATGATTCAAGCTACTGTTGTTACTTTTTTAATGGAACACAAAACTTCAGTCTGGTCAATTGGCTGGGATATGAACTTGCTAGCTGCTGCCTATTCTGGGGTTTTTGCATCAAGCATGTCATACTACGTGCAAGGATTAGTGATGGAGAAGAAAGGGCCTGTTTTTGCAACTGCATTTAGCCCTCTAATGATGATCATCGTCGCCGTAATGGGCTCCTTTATTCTCTCTGAACAAATTTATCTAGGAGGGGTGGTTGGCGCCATTTTAATTATTATAGGCTTATACTCAGTTTTGTGGGGAAAGAATAAAGAACAAATAATGGAGAGCAAAGTTACAGATGAGAATATATCCTTGGCTATAAAGTGTGCTCAAATTGATGAAAAAAATTCAAATCAGAATGCTGAAGCAGCCAACAAACTCTCTTCAGTGGCAATTGATTTGTCTCTCCCTAATTATCACATGAATGTTATTGACCAAGAAGAAAAGTTTTAA 1212 0.3985 MATEKVRCCTKFVENSQHYFAMIILQFVYGGMNIITKVSLNKGMSHYVLVVYRQVFATVAIAPLAIIFERKHQPRITFPIFIQIFVLALLGPVIDQNLYYAGLKFTSPTFACAMSNTLPAMTFVMAVLCRMEKINMKKLKCQAKVIGTIVTVAGATVMALYKGPVVEMVWTKHASHHLQHHSKTNYTNTKIPSEKDWFIGSIFVIISTIAWASLFVLQAKVIVTYKKHQLSLTSLICFIGMIQATVVTFLMEHKTSVWSIGWDMNLLAAAYSGVFASSMSYYVQGLVMEKKGPVFATAFSPLMMIIVAVMGSFILSEQIYLGGVVGAILIIIGLYSVLWGKNKEQIMESKVTDENISLAIKCAQIDEKNSNQNAEAANKLSSVAIDLSLPNYHMNVIDQEEKF 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242453g00002 403 PANTHER WAT1-RELATED PROTEIN 19 350 IPR030184 GO:0016020|GO:0022857
Stsc242453g00002 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 161 - -
Stsc242453g00002 403 Pfam EamA-like transporter family 199 338 IPR000620 GO:0016020
Stsc242453g00002 403 Pfam EamA-like transporter family 19 158 IPR000620 GO:0016020
Stsc242453g00002 403 SUPERFAMILY Multidrug resistance efflux transporter EmrE 246 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242453g00002 Stsc-Chr242453 10468 15757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242453g00002 1 400 Nodulin-like Gene Family AT5G07050 61.425 1.12e-174 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242453g00002 - - gmx:100799947 552.362