Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242453g00001 ATGAGTAGTATTCCATATCCATGCGACGATTCTTCTTCTTCTTCAGTGCCAACAAGTTTCTTAGGGCTTCTCCTTCTTCACTACTCAAGAAGCAGCGGATGCAACAGTGACAGCCATGTTCGAAGTTCCTCTGAGCTTCTCAGGGACTTCGCCAACAGGGAGATCAACGCCTTCCTCTGGCTCTCTCTGTTCCTCGTCACCGCCCTCCTTCTCAGGAAGCTCTTCAACCTCTTTAGTCTTTGGCATAAGGCCAGGAACATTCCTGGACCCCCCTGCCCCTCTTTTTATGGCCACTCCAACCTTATTTCCCGCCAAAATCTCACCGATGTCTTATCAAAATCCCATGAGAAGCATGGACCAATCGTTAAGTTGTGGTTAGGTCCTACCCAGCTTTTGGTGTCAGTTAAGGATCCTGTACTGATTCAAGAGATGCTTATAAAAGCTGAGGATAAGTTGCCTTTTACTGGAAAAGCATTTCGTCTAGCCTTTGGACAATCATCCCTCTTTGCACCTTCTTATGAAAAGGTGCAAAAGAGAAGAGAAACATTGGCAACAGAATTAAATGAAAGATTGCTCAAGACTGCTGATTTGATTCCGATGAATGTTACAGACTTTATTGTGGATAAAATAGAAAGCATCAGTGCTAAAGGAAAAATTGATTGTGGGTTGGTTTCTCAGCATATAGCTTTCACCCTAATGGGAGCCACATTCTTTGGAGATGGCTTCTTGACCAGTCCAAAAGCTGCAATTTATGAGGAACTCCTTATGATGATTGCTAAAGATGCTTGCTTTTGGGCTTCCTATAATGTTACTCCTTTCTGGAAACAAGGATTTTGGAGGTATCAATGCTTATGTACTAAGCTGAAATGCTTAACCAGCGACATTGTTCAACATTGCAGAAAAAGCTGCAAGCTATTTGGCCAAATTGATCAAAATTTTCATCATGAAAGTTCTAACAAAGAAACAAAGTCAGCACATGGTTCGCAGTGCTGTTCTGACAATGAGTTTGAAGATTACTATTTCTTTCGTGACCTGAACGATCATCAAAATGCTAAAGAGAAAGAAGAGCCTTCTGGGAACATCATGCGTGTGATGTTTCATGGATGTCACACAACTGCTGCTTTAATTTCCAATATATTGACTAGGCTTGCCATGCATCCAGGAATACAGGATAAGGTTTATTCGGAGATTAGCATGGTAGGGAAGAACCCATCAAAATATGAGCAGGAGGATATTTACAGGATGCCTTTGTTATTGGCTACAATCTATGAATCTGCACGCCTTCTGCCGACTGGCCCCATGCTACAGAGATGTTCTCTGGAACATGACTTAAGCCTTTCAACTGGTGTAACCATACCTGCTGGAGCAGTGCTGGTTGTGCCCATTCAATTGGTACAAACAGATGACACCAGTTGGGGGAGTGATGCAAGTGACTTTAATCCATATCGATTTCTGTCAAATCATGTAAAGGGATCAGGTTCTGCTGAAGAAATTACAAAGTCTGGTTCCAATTTGCTCGAACTAAATGATCCAAATGAAAATGCAGCATTTCTGCCTTTCGGATCTGGTACACGTGCATGTGTTGGGCAGAAATTTGTCATCCAAGTCATTGCAACATTGCTGGCATCATTACTCAAAAAATATGAGATAAGATCTTACCCAGAATCAGGTGATAACTCAGAACCAAGTTTGAAGAATCATCATCAACGTTATCCTAACTCGCCTGTATTATTTATTAGAAGGGACCAGTGA 1752 0.4189 MSSIPYPCDDSSSSSVPTSFLGLLLLHYSRSSGCNSDSHVRSSSELLRDFANREINAFLWLSLFLVTALLLRKLFNLFSLWHKARNIPGPPCPSFYGHSNLISRQNLTDVLSKSHEKHGPIVKLWLGPTQLLVSVKDPVLIQEMLIKAEDKLPFTGKAFRLAFGQSSLFAPSYEKVQKRRETLATELNERLLKTADLIPMNVTDFIVDKIESISAKGKIDCGLVSQHIAFTLMGATFFGDGFLTSPKAAIYEELLMMIAKDACFWASYNVTPFWKQGFWRYQCLCTKLKCLTSDIVQHCRKSCKLFGQIDQNFHHESSNKETKSAHGSQCCSDNEFEDYYFFRDLNDHQNAKEKEEPSGNIMRVMFHGCHTTAALISNILTRLAMHPGIQDKVYSEISMVGKNPSKYEQEDIYRMPLLLATIYESARLLPTGPMLQRCSLEHDLSLSTGVTIPAGAVLVVPIQLVQTDDTSWGSDASDFNPYRFLSNHVKGSGSAEEITKSGSNLLELNDPNENAAFLPFGSGTRACVGQKFVIQVIATLLASLLKKYEIRSYPESGDNSEPSLKNHHQRYPNSPVLFIRRDQ 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242453g00001 583 Gene3D Cytochrome P450 80 571 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242453g00001 583 CDD cytochrome_P450 119 555 - -
Stsc242453g00001 583 PRINTS P450 superfamily signature 527 538 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242453g00001 583 PRINTS P450 superfamily signature 420 431 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242453g00001 583 PRINTS P450 superfamily signature 518 527 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242453g00001 583 PRINTS P450 superfamily signature 367 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242453g00001 583 PRINTS E-class P450 group I signature 527 550 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242453g00001 583 PRINTS E-class P450 group I signature 115 134 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242453g00001 583 PRINTS E-class P450 group I signature 517 527 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242453g00001 583 PRINTS E-class P450 group I signature 376 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242453g00001 583 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 520 529 IPR017972 GO:0005506|GO:0016705
Stsc242453g00001 583 PANTHER CYTOCHROME P450 FAMILY 4 66 552 - -
Stsc242453g00001 583 SUPERFAMILY Cytochrome P450 84 581 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242453g00001 583 Pfam Cytochrome P450 89 559 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242453g00001 Stsc-Chr242453 4471 9216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242453g00001 57 549 Cytochrome P450 AT1G13710 24.118 3.47e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242453g00001 - - ahf:112782798 1047.73