Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242450g00001 ATGGCTTCACACAAAATTAACAATGGTGTCAAAGCAAATGAGATCTTTGAAGGTCAAGTTAAGTTGTACAAACACATGTTTGCATTCTTAGACTCTCTTTGCCTTAAGTGGTGTGTTGACATGAACATACCAAACATAATCCACAACCATGGTCAACCTATGACTCTTGATGAGTTGGTTTCAAAGTTACAAGTTCCATTAGCTAAGGTTAGTGGTGTGCACCGTTTAATGCGTTATCTTGCACACCTTGGATTCTTTGACATAGTAAGAATTATCCAAGAAGATCAAGAAGAAATGGAAGAAGCATATGCTCTCACTTATGTCTCAAAGCTCCTTGTTAGAGGCACTGACCATTGTTTATCTCCAATGGTTGACCTTATTCTTGACCCAACTGTCTCAACTTCGTACCAACAACTTGGGAAGTGGGTTCATGATGAGGGAAATCAAACACCATTTGCCATGGCATTGGGTACAGATATCTGGGACTTTCTTAGCAAGAACCCTGCACATATGAAATACTTTAATGATGCAACTGCTAGTGACTCTCAAATCATAAATTTGGCATTGAGAGATCATGGTGTTGTCTTTGAAGGGTTGGAATCAATGGTAGATGTTGCTGGTGGAACTGGAATGGTAGCCAAGTATCTCTCTGAGGCGTTTCCACATTTGAAATGCCTAGTTTTTGATCTTCCACAAGTTGTGAAAAATCTTAAAGGAAGCAACAATTTGAGTTATATTGGAGGGGATATGTTTCATTCTATTCCTAAGGCTGATGCAGTTCTACTCAAGTGGATTTTGCATGATTGGGATGATGATAATTGCATCAAGATATTGAAAAAATGCAAAGATGCTGTTTCTTCAAGTAACAATAAAAGAGGGAAAATAATTATCATAGATATTGTGATAGATGATTCAAAACAGGATGAGCCTGAAACTACCCAAGCAAAACTCCAATTGGATTTGGTGGTAACAGCATATTATAATGGAAAAGAAAGAACCAAGGAAGAATGGAAGAAACTCTTCACGGAAGTAGATTGTGAAGACTACAAAATTTCACCTTTAACCGGACACATGTCTCTGATTGAGATATATCTTTAA 1098 0.3752 MASHKINNGVKANEIFEGQVKLYKHMFAFLDSLCLKWCVDMNIPNIIHNHGQPMTLDELVSKLQVPLAKVSGVHRLMRYLAHLGFFDIVRIIQEDQEEMEEAYALTYVSKLLVRGTDHCLSPMVDLILDPTVSTSYQQLGKWVHDEGNQTPFAMALGTDIWDFLSKNPAHMKYFNDATASDSQIINLALRDHGVVFEGLESMVDVAGGTGMVAKYLSEAFPHLKCLVFDLPQVVKNLKGSNNLSYIGGDMFHSIPKADAVLLKWILHDWDDDNCIKILKKCKDAVSSSNNKRGKIIIIDIVIDDSKQDEPETTQAKLQLDLVVTAYYNGKERTKEEWKKLFTEVDCEDYKISPLTGHMSLIEIYL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242450g00001 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 365 IPR016461 GO:0008168
Stsc242450g00001 365 SUPERFAMILY "Winged helix" DNA-binding domain 13 115 IPR036390 -
Stsc242450g00001 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 118 363 IPR029063 -
Stsc242450g00001 365 Gene3D - 4 112 IPR036388 -
Stsc242450g00001 365 Pfam O-methyltransferase domain 136 343 IPR001077 GO:0008171
Stsc242450g00001 365 FunFam O-methyltransferase ZRP4 114 365 - -
Stsc242450g00001 365 Gene3D Vaccinia Virus protein VP39 114 364 IPR029063 -
Stsc242450g00001 365 FunFam Coniferyl alcohol 9-O-methyltransferase 5 112 - -
Stsc242450g00001 365 PANTHER O-METHYLTRANSFERASE 22 341 IPR016461 GO:0008168
Stsc242450g00001 365 Pfam Dimerisation domain 34 81 IPR012967 GO:0046983
Stsc242450g00001 365 PIRSF O-mtase 1 365 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242450g00001 Stsc-Chr242450 2001 3650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242450g00001 33 340 Monolignol Biosynthesis Gene Families AT5G54160 30.671 7.13e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242450g00001 K22588 - gmx:100813225 430.639